RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA816527" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA816527 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3779839 3779839 PRJNA816527_P_NODE_15723_length_262_cov_2.248677_g15673_i0 PRJNA816527 15723 262 2.248677 5.89153374 Exiguobacterium 33986 Bacteria Bacteria 484 1.99e-132   NTclustered gi|2047031806|gb|CP075897.1| 41170 g15673 i0 100 5.95801526717557 262 0 100 0 1 262 1423447 1423186 Exiguobacterium acetylicum strain SI17 chromosome, complete genome blastn 1561 484 1 Bacteria   Bacillati Bacillota Bacilli Bacillales   Exiguobacterium Exiguobacterium acetylicum
5056061 5056061 PRJNA816527_P_NODE_7044_length_388_cov_2.688889_g6994_i0 PRJNA816527 7044 388 2.688889 10.43288932 Bacillus 1386 Bacteria Bacteria 52.8 0.037   NTclustered gi|1948529707|gb|CP065943.1| 1402 g6994 i0 100 0.144329896907216 28 0 7 0 96 123 1317703 1317730 Bacillus licheniformis strain H2 chromosome, complete genome blastn 56 52.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus licheniformis
16530613 16530613 PRJNA816527_P_NODE_15393_length_266_cov_1.310881_g15343_i0 PRJNA816527 15393 266 1.310881 3.48694346 Lactobacillus 1578 Bacteria Bacteria 492 1.2099999999999999e-134   NTclustered gi|2096299657|gb|CP083392.1| 47770 g15343 i0 100 98.9511278195489 266 0 100 0 1 266 1638362 1638627 Lactobacillus crispatus strain Lc1226 chromosome, complete genome blastn 26321 492 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus
24179581 24179581 PRJNA816527_P_NODE_12579_length_296_cov_1.381166_g12529_i0 PRJNA816527 12579 296 1.381166 4.08825136 Exiguobacterium 33986 Bacteria Bacteria 547 2.8799999999999986e-151   NTclustered gi|1735050952|gb|CP030931.1| 41170 g12529 i0 100 721.023648648649 296 0 100 0 1 296 84846 85141 Exiguobacterium acetylicum strain AMCC 101217 chromosome, complete genome blastn 213423 547 1 Bacteria   Bacillati Bacillota Bacilli Bacillales   Exiguobacterium Exiguobacterium acetylicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;