RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA816047" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA816047 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26273610 26273610 PRJNA816047a_S_NODE_39102_length_333_cov_1.123077_g36442_i0 PRJNA816047 39102 333 1.123077 3.73984641 Desulfuromonas sp. AOP6 1566351 Bacteria Bacteria 52.8 0.031   NTclustered gi|1847250123|dbj|AP022810.1| 1566351 g36442 i0 100 0.0840840840840841 28 0 8 0 288 315 2331254 2331227 Desulfuromonas sp. AOP6 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. AOP6
26282470 26282470 PRJNA816047d_S_NODE_148462_length_216_cov_4.190184_g146627_i0 PRJNA816047 148462 216 4.190184 9.05079744 Desulfosediminicola flagellatus 2569541 Bacteria Bacteria 54.7 0.005   NTclustered gi|1861338670|gb|CP050698.1| 2569541 g146627 i0 92.105 0.175925925925926 38 3 18 0 68 105 145054 145091 Desulfosediminicola flagellatus strain IMCC35005 chromosome, complete genome blastn 38 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfosediminicola Desulfosediminicola flagellatus
26418340 26418340 PRJNA816047d_S_NODE_150287_length_215_cov_6.049383_g148452_i0 PRJNA816047 150287 215 6.049383 13.00617345 Desulfobacterales bacterium 2044940 Bacteria Bacteria 231 2.27e-56   NTclustered gi|2621701778|emb|OY759308.1| 2044940 g148452 i0 87.5 0.930232558139535 200 25 93 0 3 202 219824 220023 MAG: Desulfobacterales bacterium isolate 4b48c405-a8b0-44ce-a896-9916d3c4254b genome assembly, chromosome: 1 blastn 200 231 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;