RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA816047" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA816047 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26286410 26286410 PRJNA816047d_S_NODE_74774_length_267_cov_2.415888_g72939_i0 PRJNA816047 74774 267 2.415888 6.45042096 Acytostelium leptosomum 133408 Evosea other_Eukaryota 363 9.939999999999997e-96   NTclustered gi|1057487862|gb|KX539491.1| 133408 g72939 i0 95.964 61.8801498127341 223 9 84 0 1 223 2784 2562 Acytostelium leptosomum strain FG12A dihydrolipoamide acetyltransferase (pdhC) gene, complete cds blastn 16522 363 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium leptosomum
26411940 26411940 PRJNA816047a_S_NODE_71071_length_252_cov_2.849162_g68411_i0 PRJNA816047 71071 252 2.849162 7.17988824 Cavenderia fasciculata 261658 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|470260152|ref|XM_004359975.1| 261658 g68411 i0 100 1.04365079365079 30 0 12 0 119 148 5060 5031 Cavenderia fasciculata armadillo-like helical domain-containing protein (DFA_04299), partial mRNA blastn 263 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
26556889 26556889 PRJNA816047d_S_NODE_47832_length_318_cov_1.249057_g45997_i0 PRJNA816047 47832 318 1.249057 3.97200126 Arcyria fasciculata 3129285 Evosea other_Eukaryota 370 7.24e-98   NTclustered gi|2772191641|gb|PQ014998.1| 3129285 g45997 i0 89.226 96.314465408805 297 30 93 2 18 313 709 414 Arcyria fasciculata voucher TUF132142 translation elongation factor 1-alpha (EF1a) gene, partial cds blastn 30628 370 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;