RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA816047" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA816047 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26137599 26137599 PRJNA816047a_S_NODE_40269_length_328_cov_2.184314_g37609_i0 PRJNA816047 40269 328 2.184314 7.16454992 Linckia laevigata 109185 Echinodermata other_Eukaryota 52.8 0.031   NTclustered gi|1806649380|dbj|LC505033.1| 109185 g37609 i0 100 0.0853658536585366 28 0 9 0 8 35 183 156 Linckia laevigata NSMT:E-12913 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, external transcribed spacer region, partial and complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Ophidiasteridae Linckia Linckia laevigata
26145919 26145919 PRJNA816047d_S_NODE_127261_length_233_cov_41949.516667_g125426_i0 PRJNA816047 127261 233 41949.516667 97742.37383411 Ophiopsammus angusta 545800 Echinodermata other_Eukaryota 63.9 9.63e-6   NTclustered gi|1015633938|gb|KU895228.1| 545800 g125426 i0 84.375 0.553648068669528 64 10 27 0 55 118 1325 1262 Ophiopsammus angusta isolate F146229 cytochrome oxidase subunit I gene, partial cds; mitochondrial blastn 129 63.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Ophiuroidea Amphilepidida Ophiodermatidae Ophiopsammus Ophiopsammus angusta
26284752 26284752 PRJNA816047d_S_NODE_43974_length_328_cov_19597.101818_g42139_i0 PRJNA816047 43974 328 19597.101818 64278.49396304 Diadema antillarum 105358 Echinodermata other_Eukaryota 108 6.49e-19   NTclustered gi|2919551852|ref|XM_071622851.1| 105358 g42139 i0 87.234 36.734756097561 94 12 29 0 235 328 222 129 PREDICTED: Diadema antillarum late histone H2B.L3-like (LOC139710927), mRNA blastn 12049 108 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
26452389 26452389 PRJNA816047d_S_NODE_46631_length_321_cov_1.764925_g44796_i0 PRJNA816047 46631 321 1.764925 5.66540925 Metazoa 33208 Echinodermata other_Eukaryota 54.7 0.008   NTclustered gi|70887808|gb|AC165428.1| 7668 g44796 i0 94.444 1.10591900311526 36 0 11 1 216 249 481019 481054 Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence blastn 355 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
26555040 26555040 PRJNA816047d_S_NODE_19480_length_499_cov_1234.717489_g17688_i0 PRJNA816047 19480 499 1234.717489 6161.24027011 Patiria miniata 46514 Echinodermata other_Eukaryota 63.9 2.25e-5   NTclustered gi|1944940298|ref|XM_038190411.1| 46514 g17688 i0 97.297 1.59719438877756 37 1 7 0 424 460 4885 4849 PREDICTED: Patiria miniata nucleolar protein dao-5-like (LOC119720640), transcript variant X5, mRNA blastn 797 63.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;