RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA816047" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA816047 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26147044 26147044 PRJNA816047d_S_NODE_190845_length_201_cov_23740.250000_g189010_i0 PRJNA816047 190845 201 23740.25 47717.9025 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 65.8 2.25e-6   NTclustered gi|2362888154|dbj|LC580656.1| 5833 g189010 i0 97.368 0.378109452736318 38 1 19 0 85 122 558 595 Plasmodium falciparum 133_BF232_29 sera5 gene for serine repeat antigen 5, partial cds blastn 76 65.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
26180565 26180565 PRJNA816047d_S_NODE_58469_length_294_cov_1.195021_g56634_i0 PRJNA816047 58469 294 1.1950210000000001 3.51336174 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.027   NTclustered gi|82538975|ref|XM_718819.1| 5861 g56634 i0 100 0.333333333333333 28 0 10 0 267 294 4928 4955 Plasmodium yoelii uncharacterized protein (PY17X_1011100), partial mRNA blastn 98 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
26286984 26286984 PRJNA816047d_S_NODE_91494_length_255_cov_1.811881_g89659_i0 PRJNA816047 91494 255 1.811881 4.62029655 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|916416283|ref|XM_013373919.1| 5802 g89659 i0 100 0.337254901960784 30 0 12 0 112 141 594 623 Eimeria tenella uncharacterized protein (ETH_00000385), partial mRNA blastn 86 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
26313849 26313849 PRJNA816047a_S_NODE_80510_length_241_cov_0.916667_g77850_i0 PRJNA816047 80510 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 52.8 0.022   NTclustered gi|457872337|ref|XM_004223040.1| 1120755 g77850 i0 100 0.929460580912863 28 0 12 0 157 184 5908 5935 Plasmodium cynomolgi strain B hypothetical protein (PCYB_111620) mRNA, complete cds blastn 224 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium cynomolgi
26554906 26554906 PRJNA816047d_S_NODE_184512_length_203_cov_870.186667_g182677_i0 PRJNA816047 184512 203 870.18666700000006 1766.47893401 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|2362886621|dbj|LC580490.1| 5833 g182677 i0 100 0.142857142857143 29 0 14 0 96 124 699 727 Plasmodium falciparum 63_FU-249-2 sera5 gene for serine repeat antigen 5, partial cds blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
26587545 26587545 PRJNA816047d_S_NODE_142160_length_220_cov_1256.988024_g140325_i0 PRJNA816047 142160 220 1256.988024 2765.3736528 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.48e-13   NTclustered gi|527099484|dbj|AK441008.1| 5865 g140325 i0 100 93.3136363636364 48 0 22 0 52 99 254 301 Babesia bovis mRNA for hypothetical protein, complete cds, clone: XBBk008244, strain: Texas blastn 20529 89.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;