RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA816047" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA816047 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26136991 26136991 PRJNA816047a_S_NODE_33061_length_360_cov_0.982578_g30401_i0 PRJNA816047 33061 360 0.982578 3.5372808 Terriglobia bacterium 2081523 Bacteria Bacteria 200 1.15e-46   NTclustered gi|2874253792|emb|OY969776.1| 2081523 g30401 i0 84.848 0.55 198 30 55 0 22 219 950888 951085 MAG: Terriglobia bacterium isolate MFD00008.bin.1.63 genome assembly, chromosome: 1 blastn 198 200 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
26150566 26150566 PRJNA816047d_S_NODE_77541_length_264_cov_2.578199_g75706_i0 PRJNA816047 77541 264 2.578199 6.80644536 Holophagales bacterium 2478486 Bacteria Bacteria 80.5 1.11e-10   NTclustered gi|1958024485|gb|CP064972.1| 2478486 g75706 i0 83.146 0.537878787878788 89 13 33 2 23 110 4052213 4052300 Holophagales bacterium isolate EsbW_18-Q3-R4-48_BAT3C.4_cln chromosome, complete genome blastn 142 80.5 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales     Holophagales bacterium
26422894 26422894 PRJNA816047d_S_NODE_92855_length_254_cov_6.686567_g91020_i0 PRJNA816047 92855 254 6.686567 16.98388018 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 52.8 0.023   NTclustered gi|2893358450|emb|OZ220742.1| 2651171 g91020 i0 100 0.110236220472441 28 0 11 0 52 79 4201142 4201115 MAG: Thermoanaerobaculia bacterium isolate 0db66e92-d31a-4200-8262-fff8455c21c0 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;