contig_metadata
11 rows where analysis = "blastn", bioproject = "PRJNA816047" and tax_clade = "core chlorophytes"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25737174 | 25737174 | PRJNA816047d_S_NODE_108130_length_246_cov_2.896373_g106295_i0 | PRJNA816047 | 108130 | 246 | 2.896373 | 7.12507758 | Prototheca miyajii | 2034260 | Plants | Plants | 121 | 6.01e-23 | NTclustered | gi|2692959722|ref|NC_086909.1| | 2034260 | g106295 | i0 | 88.889 | 17.0609756097561 | 99 | 9 | 39 | 1 | 51 | 147 | 31470 | 31372 | Prototheca miyajii strain IFM53848 plastid, complete genome | blastn | 4197 | 121 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Chlorellales | Chlorellaceae | Prototheca | Prototheca miyajii | |
| 25741187 | 25741187 | PRJNA816047d_S_NODE_57322_length_296_cov_2.201646_g55487_i0 | PRJNA816047 | 57322 | 296 | 2.201646 | 6.51687216 | Prototheca lentecrescens | 2836214 | Plants | Plants | 313 | 1.14e-80 | NTclustered | gi|2692959681|ref|NC_086908.1| | 2836214 | g55487 | i0 | 92.273 | 103.503378378378 | 220 | 17 | 74 | 0 | 75 | 294 | 2053 | 1834 | Prototheca lentecrescens strain PK1 plastid, complete genome | blastn | 30637 | 313 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Chlorellales | Chlorellaceae | Prototheca | Prototheca lentecrescens | |
| 25770211 | 25770211 | PRJNA816047b_S_NODE_27986_length_312_cov_3.866109_g25674_i0 | PRJNA816047 | 27986 | 312 | 3.866109 | 12.06226008 | Chlorellaceae | 35461 | Plants | Plants | 453 | 6.84e-123 | NTclustered | gi|77627727|dbj|AB237642.1| | 3077 | g25674 | i0 | 100 | 77.8910256410256 | 245 | 0 | 79 | 0 | 56 | 300 | 272 | 28 | Chlorella vulgaris NIES:227 gene for 28S ribosomal RNA, partial sequence | blastn | 24302 | 453 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Chlorellales | Chlorellaceae | Chlorella | Chlorella vulgaris | |
| 25876133 | 25876133 | PRJNA816047d_S_NODE_41835_length_335_cov_3.248227_g40000_i0 | PRJNA816047 | 41835 | 335 | 3.248227 | 10.88156045 | Monoraphidium neglectum | 145388 | Plants | Plants | 52.8 | 0.032 | NTclustered | gi|926767213|ref|XM_014037205.1| | 145388 | g40000 | i0 | 100 | 0.0835820895522388 | 28 | 0 | 8 | 0 | 290 | 317 | 1103 | 1076 | Monoraphidium neglectum hypothetical protein partial mRNA | blastn | 28 | 52.8 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Chlorophyceae | Sphaeropleales | Selenastraceae | Monoraphidium | Monoraphidium neglectum | |
| 26003525 | 26003525 | PRJNA816047a_S_NODE_65556_length_262_cov_1.550265_g62896_i0 | PRJNA816047 | 65556 | 262 | 1.550265 | 4.0616943 | Chlorotetraedron incus | 162317 | Plants | Plants | 67.6 | 8.54e-7 | NTclustered | gi|674840704|ref|NC_024757.1| | 162317 | g62896 | i0 | 85.714 | 0.576335877862595 | 63 | 9 | 24 | 0 | 189 | 251 | 12026 | 11964 | Chlorotetraedron incus strain SAG 43.81 mitochondrion, complete genome | blastn | 151 | 67.6 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Chlorophyceae | Sphaeropleales | Neochloridaceae | Chlorotetraedron | Chlorotetraedron incus | |
| 26008643 | 26008643 | PRJNA816047b_S_NODE_60588_length_207_cov_4.067164_g58276_i0 | PRJNA816047 | 60588 | 207 | 4.067164 | 8.41902948 | Chlamydomonas zimbabwiensis | 158510 | Plants | Plants | 351 | 1.5899999999999995e-92 | NTclustered | gi|66864303|gb|DQ015758.1| | 158510 | g58276 | i0 | 97.129 | 107.898550724638 | 209 | 4 | 100 | 2 | 1 | 207 | 2324 | 2532 | Chlamydomonas zimbabwiensis strain UTEX 2214 26S ribosomal RNA gene, partial sequence | blastn | 22335 | 351 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Chlorophyceae | Chlamydomonadales | Chlamydomonadaceae | Chlamydomonas | Chlamydomonas zimbabwiensis | |
| 26142654 | 26142654 | PRJNA816047b_S_NODE_26917_length_318_cov_1.040816_g24605_i0 | PRJNA816047 | 26917 | 318 | 1.040816 | 3.30979488 | Chlamydomonas reinhardtii | 3055 | Plants | Plants | 250 | 9.85e-62 | NTclustered | gi|2082261216|ref|XM_001696912.2| | 3055 | g24605 | i0 | 85.477 | 1.59119496855346 | 241 | 33 | 75 | 2 | 66 | 305 | 814 | 575 | Chlamydomonas reinhardtii ribosomal protein L7a (CHLRE_12g529651v5), mRNA | blastn | 506 | 250 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Chlorophyceae | Chlamydomonadales | Chlamydomonadaceae | Chlamydomonas | Chlamydomonas reinhardtii | |
| 26281461 | 26281461 | PRJNA816047d_S_NODE_110462_length_245_cov_2.000000_g108627_i0 | PRJNA816047 | 110462 | 245 | 2 | 4.9 | Prototheca lentecrescens | 2836214 | Plants | Plants | 220 | 5.73e-53 | NTclustered | gi|2692959681|ref|NC_086908.1| | 2836214 | g108627 | i0 | 90 | 0.693877551020408 | 170 | 17 | 69 | 0 | 2 | 171 | 12992 | 13161 | Prototheca lentecrescens strain PK1 plastid, complete genome | blastn | 170 | 220 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Chlorellales | Chlorellaceae | Prototheca | Prototheca lentecrescens | |
| 26417958 | 26417958 | PRJNA816047d_S_NODE_132159_length_229_cov_2.028409_g130324_i0 | PRJNA816047 | 132159 | 229 | 2.028409 | 4.64505661 | Auxenochlorella protothecoides | 3075 | Plants | Plants | 86.1 | 2.01e-12 | NTclustered | gi|760444542|ref|XM_011401038.1| | 3075 | g130324 | i0 | 100 | 0.200873362445415 | 46 | 0 | 20 | 0 | 24 | 69 | 2133 | 2178 | Auxenochlorella protothecoides ABC transporter F family member 3 partial mRNA | blastn | 46 | 86.1 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Chlorellales | Chlorellaceae | Auxenochlorella | Auxenochlorella protothecoides | |
| 26550644 | 26550644 | PRJNA816047b_S_NODE_26304_length_321_cov_0.891129_g23992_i0 | PRJNA816047 | 26304 | 321 | 0.891129 | 2.86052409 | Chlamydomonas reinhardtii | 3055 | Plants | Plants | 196 | 1.31e-45 | NTclustered | gi|2082270606|ref|XM_001701479.2| | 3055 | g23992 | i0 | 90.066 | 0.470404984423676 | 151 | 15 | 47 | 0 | 164 | 314 | 308 | 458 | Chlamydomonas reinhardtii uncharacterized protein (CHLRE_17g732000v5), mRNA | blastn | 151 | 196 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Chlorophyceae | Chlamydomonadales | Chlamydomonadaceae | Chlamydomonas | Chlamydomonas reinhardtii | |
| 26558440 | 26558440 | PRJNA816047d_S_NODE_76552_length_265_cov_1.160377_g74717_i0 | PRJNA816047 | 76552 | 265 | 1.160377 | 3.07499905 | Lobosphaera incisa | 312850 | Plants | Plants | 143 | 1.3999999999999996e-29 | NTclustered | gi|725539263|gb|KM821265.1| | 312850 | g74717 | i0 | 85.106 | 6.28301886792453 | 141 | 19 | 53 | 2 | 23 | 162 | 144865 | 144726 | Lobosphaera incisa chloroplast, complete genome | blastn | 1665 | 143 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Lobosphaera | Lobosphaera incisa |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;