RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA815356" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA815356 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5055947 5055947 PRJNA815356_P_NODE_5644_length_304_cov_1.484848_g5481_i0 PRJNA815356 5644 304 1.484848 4.51393792 Fusobacterium 848 Bacteria Bacteria 470 6.6e-128   NTclustered gi|2705042081|gb|CP085192.1| 856 g5481 i0 94.719 508.519736842105 303 15 99 1 1 302 3422712 3422410 Fusobacterium varium strain SB069 chromosome blastn 154590 470 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
5922363 5922363 PRJNA815356_P_NODE_8125_length_261_cov_2.728723_g7962_i0 PRJNA815356 8125 261 2.728723 7.12196703 Fusobacterium hominis 2764326 Bacteria Bacteria 459 1.2000000000000002e-124   NTclustered gi|1897733338|gb|CP060637.1| 2764326 g7962 i0 99.213 504.122605363985 254 2 97 0 8 261 782523 782776 Fusobacterium hominis strain NSJ-57 chromosome, complete genome blastn 131576 459 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hominis
7197272 7197272 PRJNA815356_P_NODE_2866_length_399_cov_3.279141_g2703_i0 PRJNA815356 2866 399 3.279141 13.08377259 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 726 0   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g2703 i0 99.499 654.436090225564 399 2 100 0 1 399 197716 198114 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 261120 726 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
13981727 13981727 PRJNA815356_P_NODE_4811_length_323_cov_2.664000_g4648_i0 PRJNA815356 4811 323 2.664 8.60472 Fusobacterium 848 Bacteria Bacteria 593 4.0199999999999986e-165   NTclustered gi|2445153921|gb|CP117797.1| 851 g4648 i0 100 487.504643962848 321 0 99 0 3 323 470099 469779 Fusobacterium nucleatum strain FNA chromosome, complete genome blastn 157464 593 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
18670516 18670516 PRJNA815356_P_NODE_7775_length_266_cov_1.259067_g7612_i0 PRJNA815356 7775 266 1.259067 3.34911822 Cetobacterium somerae 188913 Bacteria Bacteria 459 1.2299999999999998e-124   NTclustered gi|2666488225|gb|CP143319.1| 188913 g7612 i0 97.744 388.627819548872 266 6 100 0 1 266 1318645 1318910 Cetobacterium somerae strain ceto chromosome, complete genome blastn 103375 459 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
22905430 22905430 PRJNA815356_P_NODE_5818_length_300_cov_2.132159_g5655_i0 PRJNA815356 5818 300 2.132159 6.396477 Cetobacterium 180162 Bacteria Bacteria 527 3.799999999999999e-145   NTclustered gi|2666488225|gb|CP143319.1| 188913 g5655 i0 98.339 500.653333333333 301 4 100 1 1 300 1804990 1804690 Cetobacterium somerae strain ceto chromosome, complete genome blastn 150196 532 0.990601503759398 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;