RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA814235" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA814235 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3778554 3778554 PRJNA814235_P_NODE_21243_length_415_cov_1.500000_g19881_i0 PRJNA814235 21243 415 1.5 6.225 Poikilolaimus 96658 Nematoda Nematoda 758 0   NTclustered gi|70609419|gb|DQ059057.1| 96660 g19881 i0 99.758 14.3301204819277 413 1 99 0 3 415 542 130 Poikilolaimus regenfussi strain SB199 28S large subunit ribosomal RNA gene, partial sequence blastn 5947 758 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus regenfussi
4645649 4645649 PRJNA814235_P_NODE_202344_length_150_cov_1.681416_g200949_i0 PRJNA814235 202344 150 1.681416 2.522124 Poikilolaimus oxycercus 96659 Nematoda Nematoda 261 1.86e-65   NTclustered gi|158821920|gb|EU195984.1| 96659 g200949 i0 98 100.66 150 3 100 0 1 150 2020 1871 Poikilolaimus oxycercus strain SB200 28S ribosomal RNA gene, partial sequence blastn 15099 261 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus oxycercus
4647007 4647007 PRJNA814235_P_NODE_81264_length_211_cov_1.528736_g79869_i0 PRJNA814235 81264 211 1.528736 3.22563296 Poikilolaimus oxycercus 96659 Nematoda Nematoda 357 3.5099999999999996e-94   NTclustered gi|158821920|gb|EU195984.1| 96659 g79869 i0 97.156 100.943127962085 211 6 100 0 1 211 2583 2793 Poikilolaimus oxycercus strain SB200 28S ribosomal RNA gene, partial sequence blastn 21299 357 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus oxycercus
16120259 16120259 PRJNA814235_P_NODE_40513_length_300_cov_2.775665_g39122_i0 PRJNA814235 40513 300 2.775665 8.326995 Rotylenchulus reniformis 239373 Nematoda Nematoda 187 7.33e-43   NTclustered gi|264664697|gb|FJ905984.1| 239373 g39122 i0 93.651 1.41 126 7 42 1 1 125 60 185 Rotylenchulus reniformis clone 190 microsatellite sequence blastn 423 187 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Hoplolaimidae Rotylenchulus Rotylenchulus reniformis
21218841 21218841 PRJNA814235_P_NODE_181317_length_152_cov_2.078261_g179922_i0 PRJNA814235 181317 152 2.078261 3.15895672 Poikilolaimus oxycercus 96659 Nematoda Nematoda 246 5.31e-61   NTclustered gi|158821920|gb|EU195984.1| 96659 g179922 i0 96.622 3.03947368421053 148 5 97 0 5 152 1718 1865 Poikilolaimus oxycercus strain SB200 28S ribosomal RNA gene, partial sequence blastn 462 246 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus oxycercus
21219640 21219640 PRJNA814235_P_NODE_38317_length_309_cov_1.911765_g36927_i0 PRJNA814235 38317 309 1.911765 5.90735385 Poikilolaimus regenfussi 96660 Nematoda Nematoda 571 1.7899999999999995e-158   NTclustered gi|8515061|gb|AF083022.1| 96660 g36927 i0 100 94.8349514563107 309 0 100 0 1 309 331 23 Poikilolaimus regenfussi strain SB199 18S ribosomal RNA gene, partial sequence blastn 29304 571 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus regenfussi
25043582 25043582 PRJNA814235_P_NODE_22580_length_402_cov_2.523288_g21216_i0 PRJNA814235 22580 402 2.523288 10.14361776 Poikilolaimus regenfussi 96660 Nematoda Nematoda 586 8.539999999999997e-163   NTclustered gi|1252285341|gb|MG051252.1| 2042950 g21216 i0 99.688 93.9900497512438 320 1 80 0 83 402 1 320 Poikilolaimus regenfussi KW-1C-12 large subunit ribosomal RNA gene, partial sequence blastn 37784 586 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Poikilolaimus Poikilolaimus regenfussi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;