RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA814235" and tax_phylum = "Candidatus Nomuraibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Nomuraibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA814235 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2093013 2093013 PRJNA814235_P_NODE_27842_length_362_cov_5.387692_g26462_i0 PRJNA814235 27842 362 5.387692 19.50344504 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 560 4.61e-155   NTclustered gi|2258875662|gb|CP060232.1| 2052152 g26462 i0 94.972 186.795580110497 358 17 99 1 6 362 963863 964220 MAG: Candidatus Nomurabacteria bacterium isolate HK-STAS-PATE-40 chromosome, complete genome blastn 67620 560 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
14846604 14846604 PRJNA814235_P_NODE_77532_length_216_cov_1.938547_g76137_i0 PRJNA814235 77532 216 1.938547 4.18726152 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 150 6.57e-32   NTclustered gi|2258865392|gb|CP060227.1| 2052152 g76137 i0 80.365 2.14814814814815 219 26 100 10 1 216 430547 430343 MAG: Candidatus Nomurabacteria bacterium isolate HK-STAS-PATE-22 chromosome, complete genome blastn 464 150 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
17396085 17396085 PRJNA814235_P_NODE_42334_length_293_cov_5.195312_g40943_i0 PRJNA814235 42334 293 5.195312 15.22226416 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 525 1.3299999999999994e-144   NTclustered gi|2258875662|gb|CP060232.1| 2052152 g40943 i0 98.976 276.600682593857 293 3 100 0 1 293 963904 963612 MAG: Candidatus Nomurabacteria bacterium isolate HK-STAS-PATE-40 chromosome, complete genome blastn 81044 525 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;