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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA814235" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 6 ✖

bioproject 1

  • PRJNA814235 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1226471 1226471 PRJNA814235_P_NODE_184481_length_151_cov_4.114035_g183086_i0 PRJNA814235 184481 151 4.114035 6.21219285 Bacillota 1239 Bacteria Bacteria 111 2e-20   NTclustered gi|2874253674|emb|OY969108.1| 34034 g183086 i0 81.579 184.523178807947 152 13 91 4 4 141 1541568 1541718 MAG: uncultured delta proteobacterium isolate MFD01828.bin.c.1 genome assembly, chromosome: 1 blastn 27863 111 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
2093689 2093689 PRJNA814235_P_NODE_58302_length_249_cov_2.632075_g56908_i0 PRJNA814235 58302 249 2.632075 6.55386675 Persicimonas caeni 2292766 Bacteria Bacteria 169 2.1399999999999996e-37   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g56908 i0 79.253 3.92369477911647 241 38 95 9 1 237 7928360 7928592 Persicimonas caeni strain YN101 chromosome blastn 977 169 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
3367003 3367003 PRJNA814235_P_NODE_15303_length_487_cov_40.164444_g14001_i0 PRJNA814235 15303 487 40.164444 195.60084228 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 414 5.26e-111   NTclustered gi|297180392|gb|GU474842.1| 710820 g14001 i0 82.258 139.989733059548 496 72 100 13 1 487 14390 14878 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 68175 414 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
3367954 3367954 PRJNA814235_P_NODE_195843_length_151_cov_1.000000_g194448_i0 PRJNA814235 195843 151 1 1.51 uncultured delta proteobacterium 34034 Bacteria Bacteria 237 3.17e-58   NTclustered gi|927353694|gb|KT322228.1| 34034 g194448 i0 94.805 73.6225165562914 154 5 100 1 1 151 178 25 Uncultured delta proteobacterium clone TGR_WLFZ-48 16S ribosomal RNA gene, partial sequence blastn 11117 237 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
9745499 9745499 PRJNA814235_P_NODE_33648_length_329_cov_4.452055_g32260_i0 PRJNA814235 33648 329 4.452055 14.64726095 uncultured delta proteobacterium 34034 Bacteria Bacteria 544 4.1899999999999996e-150   NTclustered gi|339646456|gb|JN038845.1| 34034 g32260 i0 96.636 99.0182370820669 327 11 99 0 1 327 1 327 Uncultured delta proteobacterium clone P-R58 16S ribosomal RNA gene, partial sequence blastn 32577 544 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
23769653 23769653 PRJNA814235_P_NODE_202319_length_150_cov_1.716814_g200924_i0 PRJNA814235 202319 150 1.716814 2.575221 Bradymonas sediminis 1548548 Bacteria Bacteria 132 1.53e-26   NTclustered gi|1406952946|gb|CP030032.1| 1548548 g200924 i0 90.099 3.62 101 10 67 0 1 101 3700264 3700364 Bradymonas sediminis strain FA350 chromosome, complete genome blastn 543 132 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;