RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA813520" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA813520 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3777246 3777246 PRJNA813520_S_NODE_183_length_748_cov_20.670376_g155_i0 PRJNA813520 183 748 20.670376 154.61441248 root 1 Root_unresolved Root_unresolved 54.7 0.021   NTclustered gi|2860285583|gb|CP174163.1| 2106 g155 i0 100 0.0775401069518717 29 0 4 0 161 189 335149 335177 Mycoplasma corogypsi strain BV1 chromosome, complete genome blastn 58 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma corogypsi
11018847 11018847 PRJNA813520_S_NODE_349_length_558_cov_7.275992_g309_i0 PRJNA813520 349 558 7.275992 40.60003536 Natroniella sp. ANB-PHB2 3384444 Bacteria Bacteria 54.7 0.015   NTclustered gi|2869714905|gb|CP175562.1| 3384444 g309 i0 100 0.0519713261648745 29 0 5 0 256 284 1966746 1966718 Natroniella sp. ANB-PHB2 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Bacillota Clostridia Halanaerobiales Halobacteroidaceae Natroniella Natroniella sp. ANB-PHB2
12294270 12294270 PRJNA813520_S_NODE_1350_length_308_cov_4.849462_g1303_i0 PRJNA813520 1350 308 4.849462 14.93634296 Brevibacterium casei 33889 Bacteria Bacteria 569 6.419999999999998e-158   NTclustered gi|1958263390|gb|CP068173.1| 33889 g1303 i0 100 281.016233766234 308 0 100 0 1 308 172750 173057 Brevibacterium casei strain FDAARGOS_1100 chromosome, complete genome blastn 86553 569 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium casei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;