RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA812715 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10153587 10153587 PRJNA812715_P_NODE_48168_length_392_cov_2.037618_g46371_i0 PRJNA812715 48168 392 2.037618 7.98746256 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 503 8.61e-138   NTclustered gi|1042160935|dbj|LC102274.1| 1789826 g46371 i0 89.796 95.8392857142857 392 40 100 0 1 392 580 189 Copromyxa sp. MK-2016 gene for actin, partial cds, strain: ZEB1_cl3 blastn 37569 508 0.990157480314961 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa laresi
18663830 18663830 PRJNA812715_P_NODE_13295_length_1042_cov_3.733746_g11986_i0 PRJNA812715 13295 1042 3.733746 38.90563332 Copromyxa protea 931554 Tubulinea other_Eukaryota 776 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g11986 i0 81.282 0.943378119001919 983 163 93 16 1 968 409 1385 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 983 776 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;