RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA812715 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3365593 3365593 PRJNA812715_P_NODE_89023_length_270_cov_1.563452_g87222_i0 PRJNA812715 89023 270 1.563452 4.2213204 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 372 1.67e-98   NTclustered gi|166039189|emb|CU355239.1| 100861 g87222 i0 91.513 31.1185185185185 271 21 100 2 1 270 364 95 Aphanomyces euteiches cDNA blastn 8402 372 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
11429050 11429050 PRJNA812715_P_NODE_78209_length_287_cov_1.813084_g76409_i0 PRJNA812715 78209 287 1.813084 5.20355108 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 128 4.29e-25   NTclustered gi|813177544|ref|XM_012349852.1| 695850 g76409 i0 93.103 16.7212543554007 87 6 30 0 1 87 1024 1110 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 4799 128 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
12291022 12291022 PRJNA812715_P_NODE_104630_length_250_cov_0.870056_g102829_i0 PRJNA812715 104630 250 0.870056 2.17514 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 361 3.31e-95   NTclustered gi|325194423|emb|FR825253.1| 890382 g102829 i0 98.529 82.644 204 3 100 0 47 250 361 564 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 20661 361 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
22488959 22488959 PRJNA812715_P_NODE_118758_length_242_cov_1.130178_g116957_i0 PRJNA812715 118758 242 1.130178 2.73503076 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 154 5.81e-33   NTclustered gi|695396854|ref|XM_009523296.1| 67593 g116957 i0 87.313 54.3925619834711 134 17 55 0 1 134 2281 2148 Phytophthora sojae putative GTP-binding ADP-ribosylation factor mRNA blastn 13163 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;