RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA812715 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12292399 12292399 PRJNA812715_P_NODE_37670_length_466_cov_5.201018_g35881_i0 PRJNA812715 37670 466 5.201018 24.23674388 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.013   NTclustered gi|1831517864|ref|NM_001136422.4| 6239 g35881 i0 100 0.248927038626609 29 0 6 0 385 413 36 8 Caenorhabditis elegans FIP (Fungus-Induced Protein) Related (fipr-2), partial mRNA blastn 116 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17391935 17391935 PRJNA812715_P_NODE_49974_length_382_cov_341.886731_g48177_i0 PRJNA812715 49974 382 341.886731 1306.00731242 Caenorhabditis remanei 31234 Nematoda Nematoda 52.8 0.036   NTclustered gi|2445383759|ref|XM_053732915.1| 31234 g48177 i0 100 0.146596858638743 28 0 7 0 149 176 657 630 Caenorhabditis remanei uncharacterized protein (GCK72_019189), partial mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
24176596 24176596 PRJNA812715_P_NODE_36819_length_474_cov_2.239401_g35031_i0 PRJNA812715 36819 474 2.239401 10.61476074 Rhabditida 6236 Nematoda Nematoda 287 1.16e-72   NTclustered gi|150982009|gb|EF634593.1| 452810 g35031 i0 80.315 51.8270042194093 381 73 80 2 81 460 401 22 Pristionchus sp. 3 CZ3975 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 24566 289 0.993079584775087 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 3 CZ3975

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;