RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Negarnaviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA812715 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
814783 814783 PRJNA812715_P_NODE_90401_length_268_cov_1.261538_g88600_i0 PRJNA812715 90401 268 1.261538 3.38092184 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 117 8.58e-22   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g88600 i0 97.143 1.97388059701493 70 0 25 1 200 267 70 1 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 529 117 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
2090556 2090556 PRJNA812715_P_NODE_94402_length_261_cov_4.127660_g92601_i0 PRJNA812715 94402 261 4.12766 10.7731926 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 124 4.969999999999999e-24   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g92601 i0 98.592 3.13409961685824 71 0 27 1 134 203 71 1 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 818 124 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
5915643 5915643 PRJNA812715_P_NODE_124105_length_228_cov_2.754839_g122304_i0 PRJNA812715 124105 228 2.754839 6.28103292 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 110 1.19e-19   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g122304 i0 96.97 1.96052631578947 66 0 57 2 1 64 6 71 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 447 110 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
13566379 13566379 PRJNA812715_P_NODE_25751_length_623_cov_303.841818_g24030_i0 PRJNA812715 25751 623 303.841818 1892.93452614 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 132 7.72e-26   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g24030 i0 100 2.75120385232745 71 0 22 0 142 212 1 71 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 1714 132 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
17390233 17390233 PRJNA812715_P_NODE_108354_length_248_cov_0.880000_g106553_i0 PRJNA812715 108354 248 0.88 2.1824 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 71.3 6.19e-8   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g106553 i0 97.561 0.165322580645161 41 1 17 0 1 41 41 1 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 41 71.3 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1
25040515 25040515 PRJNA812715_P_NODE_69300_length_308_cov_371.727660_g67500_i0 PRJNA812715 69300 308 371.72766 1144.9211928 Lycium betacytorhabdovirus 1 3078349 Viruses Viruses 119 2.7900000000000003e-22   NTclustered gi|2618835662|tpg|BK064324.1| 3078349 g67500 i0 97.183 2.32467532467532 71 0 32 1 76 144 1 71 TPA_asm: Lycium betacytorhabdovirus 1 cRNA sequence blastn 716 119 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   Lycium betacytorhabdovirus 1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;