RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA812715 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6329399 6329399 PRJNA812715_P_NODE_95125_length_260_cov_2.422460_g93324_i0 PRJNA812715 95125 260 2.42246 6.298396 Naegleria 5761 Heterolobosea other_Eukaryota 119 2.3000000000000003e-22   NTclustered gi|2618963742|gb|OR769034.1| 5762 g93324 i0 91.765 26.4115384615385 85 7 33 0 10 94 5141 5057 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 6867 119 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11016538 11016538 PRJNA812715_P_NODE_23149_length_678_cov_4.039669_g21463_i0 PRJNA812715 23149 678 4.039669 27.38895582 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 544 9.149999999999999e-150   NTclustered gi|2031931837|emb|OD956609.1| 5763 g21463 i0 81.437 93.4778761061947 668 120 98 4 1 666 1589 924 Naegleria fowleri Karachi_NF001 strain blastn 63378 544 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
11017924 11017924 PRJNA812715_P_NODE_66409_length_316_cov_2.580247_g64609_i0 PRJNA812715 66409 316 2.580247 8.15358052 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 244 4.55e-60   NTclustered gi|290999960|ref|XM_002682502.1| 5762 g64609 i0 81.23 34.0221518987342 309 52 97 6 2 307 338 33 Naegleria gruberi ran family small GTPase (NAEGRDRAFT_37563), mRNA blastn 10751 244 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14841427 14841427 PRJNA812715_P_NODE_42152_length_430_cov_4.238095_g40357_i0 PRJNA812715 42152 430 4.238095 18.2238085 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 789 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g40357 i0 99.767 22.7697674418605 430 1 100 0 1 430 1878 2307 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9791 789 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
21215641 21215641 PRJNA812715_P_NODE_47257_length_397_cov_2.395062_g45460_i0 PRJNA812715 47257 397 2.395062 9.50839614 Allovahlkampfia sp. PKD 2011a 1217110 Heterolobosea other_Eukaryota 728 0   NTclustered gi|399764158|gb|JQ271669.1| 1217110 g45460 i0 99.748 56.1108312342569 397 1 100 0 1 397 1010 614 Allovahlkampfia sp. PKD 2011a strain PS1073J 18S ribosomal RNA gene, partial sequence blastn 22276 728 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
21627116 21627116 PRJNA812715_P_NODE_61617_length_333_cov_1.184615_g59818_i0 PRJNA812715 61617 333 1.184615 3.94476795 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 610 4.13e-170   NTclustered gi|89148135|gb|DQ388520.1| 373144 g59818 i0 99.7 83.1051051051051 333 1 100 0 1 333 2096 1764 Heterolobosea sp. OSA 16S small subunit ribosomal RNA gene, partial sequence blastn 27674 616 0.99025974025974 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. OSA
25039305 25039305 PRJNA812715_P_NODE_30720_length_543_cov_6.353191_g28954_i0 PRJNA812715 30720 543 6.353191 34.49782713 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 460 7.48e-125   NTclustered gi|2119429492|ref|XM_044701888.1| 5763 g28954 i0 82.189 236.513812154696 539 92 99 4 6 542 620 84 Naegleria fowleri uncharacterized protein (FDP41_011476), partial mRNA blastn 128427 460 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;