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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA812715 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
811685 811685 PRJNA812715_P_NODE_101141_length_251_cov_2.230337_g99340_i0 PRJNA812715 101141 251 2.230337 5.59814587 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 250 7.52e-62   NTclustered gi|2874253789|emb|OY969773.1| 412054 g99340 i0 84.921 2.8605577689243 252 32 100 5 4 251 422327 422078 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 718 250 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
2087536 2087536 PRJNA812715_P_NODE_106962_length_248_cov_1.760000_g105161_i0 PRJNA812715 106962 248 1.76 4.3648 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 320 5.57e-83   NTclustered gi|2874253789|emb|OY969773.1| 412054 g105161 i0 89.96 122.665322580645 249 24 100 1 1 248 423710 423462 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 30421 320 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
3364754 3364754 PRJNA812715_P_NODE_59843_length_339_cov_1.932331_g58044_i0 PRJNA812715 59843 339 1.932331 6.55060209 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 346 1.31e-90   NTclustered gi|2874253978|emb|OY970303.1| 412054 g58044 i0 84.123 87.3215339233038 359 35 100 6 1 339 1903256 1902900 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 29602 346 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7191979 7191979 PRJNA812715_P_NODE_56066_length_354_cov_1.295374_g54267_i0 PRJNA812715 56066 354 1.295374 4.58562396 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 484 2.7899999999999993e-132   NTclustered gi|2874253728|emb|OY969570.1| 412054 g54267 i0 91.714 240.375706214689 350 27 99 2 3 351 172106 172454 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 85093 484 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
12290924 12290924 PRJNA812715_P_NODE_100730_length_252_cov_1.670391_g98929_i0 PRJNA812715 100730 252 1.670391 4.20938532 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 172 1.68e-38   NTclustered gi|2874253995|emb|OY970320.1| 246130 g98929 i0 80.508 1.73412698412698 236 36 92 9 14 244 321891 322121 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 437 172 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
12291414 12291414 PRJNA812715_P_NODE_119890_length_242_cov_0.911243_g118089_i0 PRJNA812715 119890 242 0.911243 2.20520806 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 346 8.930000000000001e-91   NTclustered gi|575456455|gb|CP007128.1| 861299 g118089 i0 92.531 100.140495867769 241 18 99 0 2 242 3205531 3205771 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 24234 346 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
14840033 14840033 PRJNA812715_P_NODE_109572_length_247_cov_0.885057_g107771_i0 PRJNA812715 109572 247 0.885057 2.18609079 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 440 4.079999999999999e-119   NTclustered gi|2874253789|emb|OY969773.1| 412054 g107771 i0 98.785 167.947368421053 247 3 100 0 1 247 421683 421929 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 41483 440 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18665549 18665549 PRJNA812715_P_NODE_66755_length_315_cov_1.909091_g64955_i0 PRJNA812715 66755 315 1.909091 6.01363665 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 333 9.4e-87   NTclustered gi|2874253755|emb|OY969695.1| 412054 g64955 i0 85.802 95.4380952380952 324 34 100 12 1 315 318827 318507 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 30063 333 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20351316 20351316 PRJNA812715_P_NODE_42896_length_425_cov_1.985795_g41101_i0 PRJNA812715 42896 425 1.985795 8.43962875 Gemmatirosa 1706036 Bacteria Bacteria 497 4.3799999999999996e-136   NTclustered gi|2874253789|emb|OY969773.1| 412054 g41101 i0 87.907 104.270588235294 430 43 100 9 1 425 420938 421363 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 44315 501 0.992015968063872 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
23765883 23765883 PRJNA812715_P_NODE_44519_length_414_cov_1.865103_g42723_i0 PRJNA812715 44519 414 1.865103 7.72152642 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 542 1.94e-149   NTclustered gi|2874253978|emb|OY970303.1| 412054 g42723 i0 90.557 226.239130434783 413 33 99 6 1 412 1903249 1903656 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 93663 542 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;