RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA812715 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3362998 3362998 PRJNA812715_P_NODE_118563_length_242_cov_1.473373_g116762_i0 PRJNA812715 118563 242 1.473373 3.56556266 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 363 8.869999999999999e-96   NTclustered gi|470441095|ref|XM_004339332.1| 1257118 g116762 i0 95.575 1.33471074380165 226 10 93 0 17 242 1 226 Acanthamoeba castellanii str. Neff carbohydrate binding domain cbm49 protein (ACA1_061050), partial mRNA blastn 323 363 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19938479 19938479 PRJNA812715_P_NODE_106816_length_248_cov_2.274286_g105015_i0 PRJNA812715 106816 248 2.274286 5.64022928 Paradermamoeba levis 1072175 Discosea other_Eukaryota 353 5.49e-93   NTclustered gi|342309910|gb|JN247435.1| 1072175 g105015 i0 92.742 49.5846774193548 248 12 100 4 1 248 427 186 Paradermamoeba levis 18S ribosomal RNA gene, partial sequence; mitochondrial blastn 12297 353 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Paradermamoeba Paradermamoeba levis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;