RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA812715 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9741453 9741453 PRJNA812715_P_NODE_44328_length_415_cov_2.476608_g42532_i0 PRJNA812715 44328 415 2.476608 10.2779232 Cryptomycota sp. 2012228 Fungi Fungi 484 3.32e-132   NTclustered gi|2468790980|gb|OQ702912.1| 2012228 g42532 i0 87.952 79.0385542168675 415 44 100 3 1 415 4132 3724 Cryptomycota sp. isolate PSC211 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 32801 484 1 Eukaryota Opisthokonta Fungi Cryptomycota         Cryptomycota sp.
11017389 11017389 PRJNA812715_P_NODE_49629_length_384_cov_2.228296_g47832_i0 PRJNA812715 49629 384 2.228296 8.55665664 uncultured Cryptomycota 1130064 Fungi Fungi 501 3.03e-137   NTclustered gi|2086101725|gb|MZ923286.1| 1130064 g47832 i0 90.256 101.252604166667 390 29 100 9 1 384 110 496 Uncultured Cryptomycota clone UMPB-2904 small subunit ribosomal RNA gene, partial sequence blastn 38881 501 1 Eukaryota Opisthokonta Fungi Cryptomycota         uncultured Cryptomycota

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;