RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA812715 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2089551 2089551 PRJNA812715_P_NODE_58982_length_342_cov_2.750929_g57183_i0 PRJNA812715 58982 342 2.750929 9.40817718 Chloroidium ellipsoideum 63676 Plants Plants 387 7.8e-103   NTclustered gi|294358549|gb|GU732422.1| 63676 g57183 i0 87.209 93.7514619883041 344 38 100 6 1 342 686 347 Pseudochlorella sp. CCAP 211/1A isolate YSR03 28S ribosomal RNA gene, partial sequence blastn 32063 387 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
3364294 3364294 PRJNA812715_P_NODE_44843_length_412_cov_1.616519_g43047_i0 PRJNA812715 44843 412 1.616519 6.66005828 Mantoniella tinhauana 3097027 Plants Plants 73.1 3.04e-8   NTclustered gi|2735153277|gb|CP140062.1| 3097027 g43047 i0 92.308 2.24029126213592 52 3 13 1 329 380 7639285 7639235 Mantoniella tinhauana isolate LFS chromosome 1 blastn 923 73.1 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
4641579 4641579 PRJNA812715_P_NODE_35604_length_487_cov_1.388889_g33819_i0 PRJNA812715 35604 487 1.388889 6.76388943 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.047   NTclustered gi|2082239373|ref|XM_001699987.2| 3055 g33819 i0 100 0.0574948665297741 28 0 6 0 409 436 138 111 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g097900v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5918329 5918329 PRJNA812715_P_NODE_98725_length_255_cov_1.692308_g96924_i0 PRJNA812715 98725 255 1.692308 4.3153854 Micromonas commoda 296587 Plants Plants 278 3.5100000000000005e-70   NTclustered gi|255078525|ref|XM_002502797.1| 296587 g96924 i0 86.328 29.2588235294118 256 33 100 2 1 255 57 311 Micromonas commoda translation elongation factor EF-1alpha/Tu (TEF1.1), mRNA blastn 7461 278 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
17390263 17390263 PRJNA812715_P_NODE_109434_length_247_cov_0.885057_g107633_i0 PRJNA812715 109434 247 0.885057 2.18609079 Micromonas commoda 296587 Plants Plants 52.8 0.022   NTclustered gi|255072924|ref|XM_002500091.1| 296587 g107633 i0 96.875 0.129554655870445 32 0 13 1 45 75 1467 1436 Micromonas commoda predicted protein partial mRNA blastn 32 52.8 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
18663770 18663770 PRJNA812715_P_NODE_123815_length_230_cov_2.420382_g122014_i0 PRJNA812715 123815 230 2.420382 5.5668786 Myrmecia israelensis 3171 Plants Plants 425 1.05e-114   NTclustered gi|723456786|ref|NC_025525.1| 3171 g122014 i0 100 102.782608695652 230 0 100 0 1 230 3124 3353 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 23640 425 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
19938470 19938470 PRJNA812715_P_NODE_106516_length_249_cov_0.875000_g104715_i0 PRJNA812715 106516 249 0.875 2.17875 Mantoniella tinhauana 3097027 Plants Plants 52.8 0.023   NTclustered gi|2735153286|gb|CP140071.1| 3097027 g104715 i0 100 0.112449799196787 28 0 11 0 124 151 718384 718411 Mantoniella tinhauana isolate LFS chromosome 10 blastn 28 52.8 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
21216608 21216608 PRJNA812715_P_NODE_79717_length_285_cov_1.132075_g77917_i0 PRJNA812715 79717 285 1.132075 3.22641375 Chlorella variabilis 554065 Plants Plants 54.7 0.007   NTclustered gi|552847976|ref|XM_005851931.1| 554065 g77917 i0 100 0.101754385964912 29 0 10 0 21 49 1261 1233 Chlorella variabilis hypothetical protein (CHLNCDRAFT_33435) mRNA, complete cds blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
22491500 22491500 PRJNA812715_P_NODE_88318_length_271_cov_1.555556_g86517_i0 PRJNA812715 88318 271 1.555556 4.21555676 Coccomyxa subellipsoidea 248742 Plants Plants 303 6.21e-78   NTclustered gi|1360638125|gb|AC277041.1| 574566 g86517 i0 89.344 18.7380073800738 244 23 98 3 7 248 39798 39556 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 5078 303 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
23766500 23766500 PRJNA812715_P_NODE_64059_length_324_cov_1.832669_g62260_i0 PRJNA812715 64059 324 1.832669 5.93784756 Micromonas commoda 296587 Plants Plants 167 1.0400000000000001e-36   NTclustered gi|255072468|ref|XM_002499863.1| 296587 g62260 i0 87.586 15.033950617284 145 16 44 2 181 324 190 47 Micromonas commoda predicted protein mRNA blastn 4871 167 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;