RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA812715 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11017844 11017844 PRJNA812715_P_NODE_64129_length_324_cov_1.318725_g62330_i0 PRJNA812715 64129 324 1.318725 4.272669 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 56.5 0.002   NTclustered gi|2621703574|emb|OY761449.1| 2026734 g62330 i0 96.97 0.101851851851852 33 1 10 0 217 249 2338162 2338194 MAG: Dehalococcoidia bacterium isolate 8faaec51-6d46-4fc3-9050-60b85d5760d4 genome assembly, chromosome: 1 blastn 33 56.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
12293990 12293990 PRJNA812715_P_NODE_89390_length_269_cov_2.479592_g87589_i0 PRJNA812715 89390 269 2.479592 6.67010248 uncultured Dehalococcoidia bacterium 498747 Bacteria Bacteria 56.5 0.002   NTclustered gi|2531950174|emb|OY282494.1| 498747 g87589 i0 97.059 0.12639405204461 34 0 12 1 49 81 2830519 2830486 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 34 56.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
19076301 19076301 PRJNA812715_P_NODE_101115_length_251_cov_2.449438_g99314_i0 PRJNA812715 101115 251 2.449438 6.14808938 Bacteria 2 Bacteria Bacteria 84.2 8.07e-12   NTclustered gi|2518551288|emb|OX638345.1| 498747 g99314 i0 91.803 3.70916334661355 61 3 24 2 193 251 2827781 2827841 MAG: uncultured Dehalococcoidia bacterium isolate 64bd3295-a2ac-4bb0-a587-f708157bf7f0 genome assembly, chromosome: 1 blastn 931 84.2 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;