RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA812715" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA812715 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4640233 4640233 PRJNA812715_P_NODE_103284_length_250_cov_1.655367_g101483_i0 PRJNA812715 103284 250 1.655367 4.1384175 Halamphora coffeiformis 1487565 SAR_Eukaryotes SAR_Eukaryotes 106 1.71e-18   NTclustered gi|1418576889|ref|NC_037727.1| 1487565 g101483 i0 82.645 0.656 121 20 48 1 123 242 31722 31602 Halamphora coffeaeformis mitochondrion, complete genome blastn 164 106 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Amphipleuraceae Halamphora Halamphora coffeiformis
6329171 6329171 PRJNA812715_P_NODE_68565_length_310_cov_2.746835_g66765_i0 PRJNA812715 68565 310 2.746835 8.5151885 Bacteriastrum 426670 SAR_Eukaryotes SAR_Eukaryotes 82.4 3.69e-11   NTclustered gi|572099130|gb|KC914886.1| 426671 g66765 i0 86.486 16.0774193548387 74 10 24 0 231 304 544 617 Bacteriastrum hyalinum strain PMF BA2 28S ribosomal RNA gene, partial sequence blastn 4984 82.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Bacteriastrum Bacteriastrum hyalinum
8465963 8465963 PRJNA812715_P_NODE_32307_length_523_cov_4.322222_g30534_i0 PRJNA812715 32307 523 4.322222 22.60522106 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 331 5.8800000000000004e-86   NTclustered gi|224004207|ref|XM_002295719.1| 296543 g30534 i0 80.044 72.2676864244742 451 86 86 4 4 452 31 479 Thalassiosira pseudonana CCMP1335 calmodulin (CAM1), mRNA blastn 37796 331 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
22490642 22490642 PRJNA812715_P_NODE_58578_length_344_cov_1.398524_g56779_i0 PRJNA812715 58578 344 1.398524 4.81092256 Sellaphora cf. seminulum 433382 SAR_Eukaryotes SAR_Eukaryotes 577 4.3399999999999997e-160   NTclustered gi|134143237|gb|EF151967.1| 433382 g56779 i0 96.821 100.354651162791 346 9 100 2 1 344 1091 746 Sellaphora cf. seminulum clone TM37 18S ribosomal RNA gene, partial sequence blastn 34522 577 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Sellaphoraceae Sellaphora Sellaphora cf. seminulum
23766643 23766643 PRJNA812715_P_NODE_69039_length_309_cov_2.542373_g67239_i0 PRJNA812715 69039 309 2.542373 7.85593257 Nitzschia sp. (in: diatoms) 1884248 SAR_Eukaryotes SAR_Eukaryotes 507 5.12e-139   NTclustered gi|2862228875|gb|PQ645509.1| 1884248 g67239 i0 96.417 99.1877022653722 307 11 99 0 3 309 3750 4056 Nitzschia sp. (in: diatoms) isolate AGSB0363 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 30649 507 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia sp. (in: diatoms)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;