RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA812001" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA812001 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5914372 5914372 PRJNA812001_P_NODE_76985_length_252_cov_2.581006_g76739_i0 PRJNA812001 76985 252 2.581006 6.50413512 Gemmataceae bacterium 2052164 Bacteria Bacteria 316 7.34e-82   NTclustered gi|2063814025|emb|LR586051.1| 2052164 g76739 i0 89.879 2.16666666666667 247 23 98 2 1 246 7009524 7009279 Gemmata bacterium CJuql4 whole genome assembly and annotation blastn 546 316 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
8463576 8463576 PRJNA812001_P_NODE_25507_length_351_cov_7.874101_g25261_i0 PRJNA812001 25507 351 7.874101 27.63809451 Gimesia chilikensis 2605989 Bacteria Bacteria 584 2.639999999999999e-162   NTclustered gi|1712472787|gb|CP036266.1| 2605989 g25261 i0 99.379 6.66096866096866 322 2 92 0 30 351 640643 640964 Gimesia chilikensis strain HG66A1 chromosome blastn 2338 584 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia chilikensis
14839072 14839072 PRJNA812001_P_NODE_6932_length_588_cov_16.025243_g6688_i0 PRJNA812001 6932 588 16.025243 94.22842884 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 233 1.93e-56   NTclustered gi|2874253757|emb|OY969698.1| 100233 g6688 i0 90 9.13095238095238 180 18 31 0 21 200 4422724 4422903 MAG: uncultured Planctomycetaceae bacterium isolate MFD00082.bin.2.56 genome assembly, chromosome: 1 blastn 5369 233 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;