RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA812001" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA812001 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11428259 11428259 PRJNA812001_P_NODE_42969_length_303_cov_1.830435_g42723_i0 PRJNA812001 42969 303 1.830435 5.54621805 Polyangiaceae 49 Bacteria Bacteria 313 1.17e-80   NTclustered gi|169977285|emb|AM946600.1| 52 g42723 i0 86.879 124.442244224422 282 33 92 4 1 280 1736 2015 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 37706 313 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
16113495 16113495 PRJNA812001_P_NODE_7893_length_552_cov_1.557411_g7648_i0 PRJNA812001 7893 552 1.557411 8.59690872 Cystobacter fuscus 43 Bacteria Bacteria 322 3.75e-83   NTclustered gi|2579656172|gb|CP043491.1| 43 g7648 i0 77.716 54.0090579710145 543 110 97 11 1 537 9696015 9695478 Cystobacter fuscus strain Cbf 10 chromosome, complete genome blastn 29813 322 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;