RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA812001" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA812001 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
810394 810394 PRJNA812001_P_NODE_14001_length_430_cov_5.156863_g13755_i0 PRJNA812001 14001 430 5.156863 22.1745109 Jujube closterovirus 1 3043313 Viruses Viruses 52.8 0.041   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g13755 i0 100 0.0651162790697674 28 0 7 0 1 28 7 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
5914344 5914344 PRJNA812001_P_NODE_72985_length_258_cov_1.248649_g72739_i0 PRJNA812001 72985 258 1.248649 3.22151442 Potexvirus cymbidii 3433819 Viruses Viruses 466 7.08e-127   NTclustered gi|90968201|emb|AM236036.1| 12178 g72739 i0 99.225 11.2209302325581 258 2 100 0 1 258 283 26 Cymbidium mosaic virus partial RdRp gene for RNA-dependent RNA polymerase, isolate FRA07, genomic RNA blastn 2895 466 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus cymbidii
7189070 7189070 PRJNA812001_P_NODE_61246_length_273_cov_4.155000_g61000_i0 PRJNA812001 61246 273 4.155 11.34315 Jujube closterovirus 1 3043313 Viruses Viruses 52.8 0.025   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g61000 i0 100 0.102564102564103 28 0 10 0 246 273 34 7 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
9739082 9739082 PRJNA812001_P_NODE_75668_length_254_cov_1.701657_g75422_i0 PRJNA812001 75668 254 1.701657 4.32220878 Potexvirus cymbidii 3433819 Viruses Viruses 459 1.1599999999999999e-124   NTclustered gi|939193298|gb|KR185347.1| 12178 g75422 i0 99.213 28.9606299212598 254 2 100 0 1 254 4747 4494 Cymbidium mosaic virus isolate China, complete genome blastn 7356 459 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus cymbidii
9739161 9739161 PRJNA812001_P_NODE_8_length_6187_cov_10.969905_g3_i0 PRJNA812001 8 6187 10.969905 678.70802235 Potexvirus cymbidii 3433819 Viruses Viruses 11326 0   NTclustered gi|1964785387|gb|MT833930.1| 12178 g3 i0 99.709 35.9754323581704 6187 18 100 0 1 6187 6198 12 Cymbidium mosaic virus isolate Chenshan, complete genome blastn 222580 11326 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus cymbidii
21212741 21212741 PRJNA812001_P_NODE_35277_length_321_cov_1.241935_g35031_i0 PRJNA812001 35277 321 1.241935 3.98661135 Potexvirus cymbidii 3433819 Viruses Viruses 593 3.9899999999999986e-165   NTclustered gi|284002549|dbj|AB541545.1| 12178 g35031 i0 100 99.981308411215 321 0 100 0 1 321 441 121 Cymbidium mosaic virus CP gene for coat protein, complete cds, strain: CYK12 blastn 32094 593 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus cymbidii
23763142 23763142 PRJNA812001_P_NODE_30719_length_333_cov_3.615385_g30473_i0 PRJNA812001 30719 333 3.615385 12.03923205 Carlavirus latensdianthi 3427766 Viruses Viruses 60.2 1.88e-4   NTclustered gi|1995060321|gb|MN450069.1| 12164 g30473 i0 97.222 0.198198198198198 36 0 11 1 1 35 8 43 Carnation latent virus isolate KL, complete genome blastn 66 60.2 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;