RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA812001" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA812001 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7188467 7188467 PRJNA812001_P_NODE_11906_length_459_cov_8.844560_g11660_i0 PRJNA812001 11906 459 8.84456 40.5965304 Coscinodiscus granii 265552 SAR_Eukaryotes SAR_Eukaryotes 167 1.52e-36   NTclustered gi|2192941198|ref|NC_060315.1| 265552 g11660 i0 79.098 36.1525054466231 244 50 53 1 25 267 28278 28521 Coscinodiscus granii mitochondrion, complete sequence blastn 16594 167 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Coscinodiscales Coscinodiscaceae Coscinodiscus Coscinodiscus granii
12289813 12289813 PRJNA812001_P_NODE_2370_length_978_cov_23.401105_g2177_i0 PRJNA812001 2370 978 23.401105 228.8628069 Bacterosira constricta 1792275 SAR_Eukaryotes SAR_Eukaryotes 180 4.36e-40   NTclustered gi|2862228847|gb|PQ645481.1| 1792275 g2177 i0 77.961 16.1543967280164 304 56 51 8 681 978 3594 3296 Bacterosira constricta isolate AGSB0311 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15799 180 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Bacterosira Bacterosira constricta
16112904 16112904 PRJNA812001_P_NODE_17893_length_394_cov_0.947040_g17647_i0 PRJNA812001 17893 394 0.94704 3.7313376 Proschkinia sp. SZCZR1824 2588390 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.73e-10   NTclustered gi|1681061561|gb|MH800316.1| 2588390 g17647 i0 76.433 1.76395939086294 157 31 39 6 225 379 4566 4414 Proschkinia sp. SZCZR1824 mitochondrion, complete genome blastn 695 80.5 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Proschkiniaceae Proschkinia Proschkinia sp. SZCZR1824

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;