RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA812001" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA812001 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13564125 13564125 PRJNA812001_P_NODE_21871_length_368_cov_4.898305_g21625_i0 PRJNA812001 21871 368 4.898305 18.0257624 Stenophora draconis 2977109 SAR_Eukaryotes SAR_Eukaryotes 187 9.179999999999997e-43   NTclustered gi|2295827472|gb|OP390087.1| 2977109 g21625 i0 86.982 63.4157608695652 169 19 45 2 1 167 5027 5194 Stenophora sp. TMiroliubova-2022b isolate T35 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23337 187 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Stenophoridae Stenophora Stenophora draconis
20350819 20350819 PRJNA812001_P_NODE_65356_length_268_cov_1.215385_g65110_i0 PRJNA812001 65356 268 1.215385 3.2572318 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 58.4 5.27e-4   NTclustered gi|820702250|tpe|LN714502.1| 432359 g65110 i0 100 0.23134328358209 31 0 12 0 78 108 3278074 3278044 TPA_asm: Toxoplasma gondii VEG, chromosome chrXII, complete genome blastn 62 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;