RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA812001" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA812001 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11014375 11014375 PRJNA812001_P_NODE_19509_length_382_cov_2.598706_g19263_i0 PRJNA812001 19509 382 2.598706 9.92705692 Dinema validum 2704078 Euglenozoa other_Eukaryota 52.8 0.036   NTclustered gi|1803019085|gb|MT007857.1| 2704078 g19263 i0 100 0.0732984293193717 28 0 7 0 1 28 8 35 Dinema validum isolate AB2_2 small subunit ribosomal RNA gene, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Dinema Dinema validum
18662414 18662414 PRJNA812001_P_NODE_72075_length_259_cov_1.279570_g71829_i0 PRJNA812001 72075 259 1.27957 3.3140863 Leishmania enriettii 5663 Euglenozoa other_Eukaryota 135 2.28e-27   NTclustered gi|2794776877|ref|XM_067833871.1| 5663 g71829 i0 82.716 24.7606177606178 162 18 61 9 80 236 294 138 Leishmania enriettii uncharacterized protein (CUR178_02108), partial mRNA blastn 6413 135 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania enriettii
23763181 23763181 PRJNA812001_P_NODE_34719_length_322_cov_5.265060_g34473_i0 PRJNA812001 34719 322 5.26506 16.9534932 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 150 1.04e-31   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g34473 i0 76.238 2.95962732919255 303 60 93 12 24 322 4022 4316 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 953 150 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;