RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA812001" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA812001 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
810493 810493 PRJNA812001_P_NODE_19641_length_381_cov_14.068182_g19395_i0 PRJNA812001 19641 381 14.068182 53.59977342 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 134 1.26e-26   NTclustered gi|89357437|gb|DQ407656.1| 5778 g19395 i0 94.253 0.228346456692913 87 5 23 0 24 110 325 411 Hartmannella vermiformis chitinase-like protein cluster A mRNA, partial cds blastn 87 134 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2086041 2086041 PRJNA812001_P_NODE_135702_length_238_cov_9.242424_g135456_i0 PRJNA812001 135702 238 9.242424 21.99696912 Phalansterium sp. PJK-2012 1267188 Evosea other_Eukaryota 89.8 1.63e-13   NTclustered gi|429125732|gb|KC121006.1| 1267188 g135456 i0 98.039 2.28991596638655 51 1 21 0 23 73 916 966 Phalansterium sp. PJK-2012 mitochondrion, complete genome blastn 545 89.8 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium sp. PJK-2012
2086108 2086108 PRJNA812001_P_NODE_16762_length_402_cov_44.927052_g16516_i0 PRJNA812001 16762 402 44.927052 180.60674904 uncultured Variosea 2777566 Evosea other_Eukaryota 222 2.78e-53   NTclustered gi|2006880850|emb|HG995806.1| 2777566 g16516 i0 78.706 35.7363184079602 371 52 89 20 47 402 602 960 uncultured Variosea genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, clone 62615b63 blastn 14366 222 1 Eukaryota Amoebozoa   Evosea Variosea       uncultured Variosea
3361259 3361259 PRJNA812001_P_NODE_136703_length_229_cov_6.108974_g136457_i0 PRJNA812001 136703 229 6.108974 13.98955046 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 161 3.25e-35   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g136457 i0 95.098 4.89519650655022 102 5 45 0 128 229 808 909 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 1121 161 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
5914178 5914178 PRJNA812001_P_NODE_5045_length_688_cov_10.222764_g4809_i0 PRJNA812001 5045 688 10.222764 70.33261632 Cochliopodium minus 313997 Discosea other_Eukaryota 976 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g4809 i0 95.2 46.0813953488372 625 17 90 10 1 620 620 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 31704 976 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
17388689 17388689 PRJNA812001_P_NODE_137534_length_215_cov_71.422535_g137288_i0 PRJNA812001 137534 215 71.422535 153.55845025 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 198 2.3e-46   NTclustered gi|909719647|gb|KT185627.1| 5778 g137288 i0 83.636 5.11627906976744 220 27 100 5 1 215 51222 51437 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 1100 198 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;