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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA811725" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 14 ✖

bioproject 1

  • PRJNA811725 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1224138 1224138 PRJNA811725_P_NODE_41881_length_241_cov_0.916667_g41635_i0 PRJNA811725 41881 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 446 8.519999999999999e-121   NTclustered gi|717462921|gb|KM390026.1| 11676 g41635 i0 100 99.9958506224066 241 0 100 0 1 241 6342 6102 HIV-1 clone NL43I151V from USA, complete genome blastn 24099 446 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
3776095 3776095 PRJNA811725_P_NODE_803_length_1307_cov_2.166126_g713_i0 PRJNA811725 803 1307 2.166126 28.31126682 root 1 Root_unresolved Root_unresolved 2403 0   NTclustered gi|6274514|gb|L03561.2|HL1RHK30X 11908 g713 i0 99.847 99.9938791124713 1307 2 100 0 1 1307 3742 2436 Human T Cell Lymphotropic Virus I complete genome blastn 130692 2403 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Deltaretrovirus Deltaretrovirus priTlym1
5913363 5913363 PRJNA811725_P_NODE_28245_length_291_cov_1.573394_g27999_i0 PRJNA811725 28245 291 1.573394 4.57857654 Meadowvirus AH04 3060193 Viruses Viruses 217 9.03e-52   NTclustered gi|2438095778|ref|NC_070952.1| 2869569 g27999 i0 84.071 2.02061855670103 226 34 77 2 67 291 242527 242303 Erwinia phage AH04, complete genome blastn 588 217 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Chimalliviridae Meadowvirus Meadowvirus AH04
7188229 7188229 PRJNA811725_P_NODE_30966_length_280_cov_1.743961_g30720_i0 PRJNA811725 30966 280 1.743961 4.8830908 Bacteriophage sp. 38018 Viruses Viruses 442 1.3099999999999994e-119   NTclustered gi|2050458957|tpg|BK016709.1| 38018 g30720 i0 95.324 0.992857142857143 278 13 99 0 3 280 15171 14894 MAG TPA_asm: Bacteriophage sp. isolate ctxSu10, partial genome blastn 278 442 1 Viruses               Bacteriophage sp.
12289444 12289444 PRJNA811725_P_NODE_9390_length_483_cov_1.553659_g9146_i0 PRJNA811725 9390 483 1.553659 7.50417297 Betanodavirus epinepheli 3427237 Viruses Viruses 893 0   NTclustered gi|156076357|gb|EF558368.1| 43763 g9146 i0 100 98.0600414078675 483 0 100 0 1 483 2506 2988 Redspotted grouper nervous necrosis virus isolate China 1 RNA-dependent RNA polymerase gene, complete cds blastn 47363 893 1 Viruses   Orthornavirae Kitrinoviricota Magsaviricetes Nodamuvirales Nodaviridae Betanodavirus Betanodavirus epinepheli
13563620 13563620 PRJNA811725_P_NODE_32391_length_273_cov_1.540000_g32145_i0 PRJNA811725 32391 273 1.54 4.2042 Caudoviricetes sp. 2832643 Viruses Viruses 353 6.14e-93   NTclustered gi|2053058458|tpg|BK024596.1| 2832643 g32145 i0 90.11 57.2454212454212 273 26 100 1 1 273 5363 5092 MAG TPA_asm: Caudoviricetes sp. isolate ctaIB11, partial genome blastn 15628 353 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
13977894 13977894 PRJNA811725_P_NODE_32451_length_273_cov_1.210000_g32205_i0 PRJNA811725 32451 273 1.21 3.3033 Viruses 10239 Viruses Viruses 377 3.64e-100   NTclustered gi|2067460891|gb|MW677512.1| 2835969 g32205 i0 91.667 10.6263736263736 276 17 100 4 1 273 41822 41550 Rhodobacter phage RcFrancesLouise, complete genome blastn 2901 377 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Rhodobacter phage RcFrancesLouise
14838069 14838069 PRJNA811725_P_NODE_1632_length_1014_cov_1.851222_g1481_i0 PRJNA811725 1632 1014 1.851222 18.77139108 Deltaretrovirus priTlym1 3428212 Viruses Viruses 1862 0   NTclustered gi|6274516|gb|L03562.2|HL1RHK34X 11908 g1481 i0 99.803 99.9980276134122 1014 2 100 0 1 1014 2421 1408 Human T cell lymphotrophic virus type I (HTLV-I) (gag, env, rex, tat) genes, complete cds; (pol) gene, 3' end blastn 101398 1862 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Deltaretrovirus Deltaretrovirus priTlym1
14838152 14838152 PRJNA811725_P_NODE_27152_length_296_cov_3.417040_g26906_i0 PRJNA811725 27152 296 3.41704 10.1144384 Caudoviricetes sp. 2832643 Viruses Viruses 143 1.59e-29   NTclustered gi|2914852300|gb|OR221708.1| 2832643 g26906 i0 95.506 2.61824324324324 89 4 49 0 133 221 27661 27573 MAG: Caudoviricetes sp. isolate MSP1326 genomic sequence blastn 775 143 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
17388340 17388340 PRJNA811725_P_NODE_30474_length_282_cov_1.846890_g30228_i0 PRJNA811725 30474 282 1.84689 5.2082298 Potexvirus marmormanihotis 3433851 Viruses Viruses 499 7.729999999999999e-137   NTclustered gi|1939515391|gb|MT334616.1| 39046 g30228 i0 98.582 17.6205673758865 282 4 100 0 1 282 2383 2102 Cassava common mosaic virus isolate PisVera RdRp, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and CP genes, complete cds blastn 4969 499 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus marmormanihotis
19936669 19936669 PRJNA811725_P_NODE_30816_length_281_cov_1.269231_g30570_i0 PRJNA811725 30816 281 1.269231 3.56653911 Rhodobacter phage RcKvothe 2970517 Viruses Viruses 385 2.25e-102   NTclustered gi|2284663167|gb|OP009275.1| 2970517 g30570 i0 91.697 9.8576512455516 277 23 99 0 5 281 20077 19801 Rhodobacter phage RcKvothe, complete genome blastn 2770 385 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Rhodobacter phage RcKvothe
23762571 23762571 PRJNA811725_P_NODE_31839_length_276_cov_1.315271_g31593_i0 PRJNA811725 31839 276 1.315271 3.63014796 Potexvirus marmormanihotis 3433851 Viruses Viruses 505 1.62e-138   NTclustered gi|1939515391|gb|MT334616.1| 39046 g31593 i0 99.638 9.01086956521739 276 1 100 0 1 276 231 506 Cassava common mosaic virus isolate PisVera RdRp, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and CP genes, complete cds blastn 2487 505 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus marmormanihotis
23762614 23762614 PRJNA811725_P_NODE_37199_length_249_cov_0.875000_g36953_i0 PRJNA811725 37199 249 0.875 2.17875 Caudoviricetes sp. 2832643 Viruses Viruses 270 5.72e-68   NTclustered gi|2056947620|tpg|BK022619.1| 2832643 g36953 i0 89.352 1.85542168674699 216 21 86 2 1 215 13677 13463 MAG TPA_asm: Caudoviricetes sp. isolate ctY7F3, partial genome blastn 462 270 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
24175630 24175630 PRJNA811725_P_NODE_29579_length_286_cov_1.384977_g29333_i0 PRJNA811725 29579 286 1.384977 3.96103422 root 1 Root_unresolved Root_unresolved 156 1.96e-33   NTclustered gi|1147720577|gb|KX868451.1| 10515 g29333 i0 87.879 45.3566433566434 132 16 46 0 1 132 759 890 Human adenovirus 2 isolate GyK178 DNA polymerase, penton base, and hexon genes, partial cds blastn 12972 156 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;