RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA811725" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA811725 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3360855 3360855 PRJNA811725_P_NODE_23763_length_310_cov_6.924051_g23517_i0 PRJNA811725 23763 310 6.924051 21.4645581 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 167 9.909999999999998e-37   NTclustered gi|2108172456|gb|CP070716.1| 2026742 g23517 i0 89.051 2.33870967741935 137 11 44 4 176 310 2811047 2810913 MAG: Gemmatimonadetes bacterium isolate bin486 chromosome blastn 725 167 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
8462952 8462952 PRJNA811725_P_NODE_24287_length_310_cov_2.907173_g24041_i0 PRJNA811725 24287 310 2.907173 9.0122363 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 178 4.58e-40   NTclustered gi|2874253978|emb|OY970303.1| 412054 g24041 i0 88.158 0.964516129032258 152 14 48 4 161 310 1746968 1746819 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 299 178 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17388278 17388278 PRJNA811725_P_NODE_24054_length_310_cov_3.476793_g23808_i0 PRJNA811725 24054 310 3.476793 10.7780583 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 156 2.15e-33   NTclustered gi|575456455|gb|CP007128.1| 861299 g23808 i0 90 0.861290322580645 120 12 40 0 31 150 2600349 2600468 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 267 156 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
22486821 22486821 PRJNA811725_P_NODE_26158_length_299_cov_5.110619_g25912_i0 PRJNA811725 26158 299 5.110619 15.28075081 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 351 2.45e-92   NTclustered gi|575456455|gb|CP007128.1| 861299 g25912 i0 87.736 39.123745819398 318 18 99 6 3 299 3929167 3929484 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 11698 351 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;