RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA811725" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA811725 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1224138 1224138 PRJNA811725_P_NODE_41881_length_241_cov_0.916667_g41635_i0 PRJNA811725 41881 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 446 8.519999999999999e-121   NTclustered gi|717462921|gb|KM390026.1| 11676 g41635 i0 100 99.9958506224066 241 0 100 0 1 241 6342 6102 HIV-1 clone NL43I151V from USA, complete genome blastn 24099 446 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
3776095 3776095 PRJNA811725_P_NODE_803_length_1307_cov_2.166126_g713_i0 PRJNA811725 803 1307 2.166126 28.31126682 root 1 Root_unresolved Root_unresolved 2403 0   NTclustered gi|6274514|gb|L03561.2|HL1RHK30X 11908 g713 i0 99.847 99.9938791124713 1307 2 100 0 1 1307 3742 2436 Human T Cell Lymphotropic Virus I complete genome blastn 130692 2403 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Deltaretrovirus Deltaretrovirus priTlym1
14838069 14838069 PRJNA811725_P_NODE_1632_length_1014_cov_1.851222_g1481_i0 PRJNA811725 1632 1014 1.851222 18.77139108 Deltaretrovirus priTlym1 3428212 Viruses Viruses 1862 0   NTclustered gi|6274516|gb|L03562.2|HL1RHK34X 11908 g1481 i0 99.803 99.9980276134122 1014 2 100 0 1 1014 2421 1408 Human T cell lymphotrophic virus type I (HTLV-I) (gag, env, rex, tat) genes, complete cds; (pol) gene, 3' end blastn 101398 1862 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Deltaretrovirus Deltaretrovirus priTlym1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;