RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA811725" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA811725 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2085659 2085659 PRJNA811725_P_NODE_27362_length_295_cov_3.801802_g27116_i0 PRJNA811725 27362 295 3.801802 11.2153159 Leptotrichia wadei 157687 Bacteria Bacteria 527 3.7299999999999984e-145   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g27116 i0 98.98 3.76949152542373 294 3 99 0 1 294 1191654 1191361 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 1112 527 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
9738156 9738156 PRJNA811725_P_NODE_39688_length_245_cov_0.895349_g39442_i0 PRJNA811725 39688 245 0.895349 2.19360505 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 442 1.1199999999999994e-119   NTclustered gi|1276705688|gb|CP024698.1| 2663009 g39442 i0 99.184 100.134693877551 245 2 100 0 1 245 144927 145171 Fusobacterium pseudoperiodonticum strain KCOM 1283 chromosome, complete genome blastn 24533 442 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
13563576 13563576 PRJNA811725_P_NODE_26151_length_299_cov_5.473451_g25905_i0 PRJNA811725 26151 299 5.473451 16.36561849 Leptotrichia wadei 157687 Bacteria Bacteria 446 1.09e-120   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g25905 i0 92.857 8.52842809364548 322 0 100 1 1 299 1893825 1893504 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 2550 446 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
13563669 13563669 PRJNA811725_P_NODE_36711_length_250_cov_0.870056_g36465_i0 PRJNA811725 36711 250 0.870056 2.17514 Fusobacterium animalis 76859 Bacteria Bacteria 462 8.83e-126   NTclustered gi|2078825571|gb|CP071099.1| 76859 g36465 i0 100 99.552 250 0 100 0 1 250 2047473 2047722 Fusobacterium animalis strain THCT5A4 chromosome, complete genome blastn 24888 462 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis
18661448 18661448 PRJNA811725_P_NODE_32375_length_273_cov_1.805000_g32129_i0 PRJNA811725 32375 273 1.805 4.92765 Fusobacterium vincentii 155615 Bacteria Bacteria 505 1.6e-138   NTclustered gi|2593368740|dbj|AP028933.1| 155615 g32129 i0 100 89.8534798534799 273 0 100 0 1 273 67395 67667 Fusobacterium vincentii TDC100 DNA, complete genome blastn 24530 505 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium vincentii
24175625 24175625 PRJNA811725_P_NODE_28959_length_288_cov_2.265116_g28713_i0 PRJNA811725 28959 288 2.265116 6.52353408 Fusobacterium 848 Bacteria Bacteria 532 7.8e-147   NTclustered gi|1208657894|gb|CP021934.1| 76857 g28713 i0 100 119.552083333333 288 0 100 0 1 288 1749183 1749470 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) genome blastn 34431 532 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
25036351 25036351 PRJNA811725_P_NODE_23820_length_310_cov_4.949367_g23574_i0 PRJNA811725 23820 310 4.949367 15.3430377 Fusobacterium polymorphum 76857 Bacteria Bacteria 527 3.9499999999999986e-145   NTclustered gi|2706407748|gb|CP077116.1| 76857 g23574 i0 96.774 97.5387096774193 310 7 100 1 1 310 2414070 2414376 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 30237 527 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;