RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA811725" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA811725 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7188363 7188363 PRJNA811725_P_NODE_7366_length_542_cov_16.929638_g7124_i0 PRJNA811725 7366 542 16.929638 91.75863796 Planctellipticum variicoloris 3064265 Bacteria Bacteria 361 7.79e-95   NTclustered gi|2557458921|gb|CP130886.1| 3064265 g7124 i0 80.625 0.885608856088561 480 81 87 8 60 533 6364637 6365110 Planctellipticum variicoloris strain SH412 chromosome, complete genome blastn 480 361 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctellipticum Planctellipticum variicoloris
11013854 11013854 PRJNA811725_P_NODE_23989_length_310_cov_3.691983_g23743_i0 PRJNA811725 23989 310 3.691983 11.4451473 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 106 2.19e-18   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g23743 i0 79.333 0.483870967741935 150 31 48 0 1 150 563494 563345 Luteolibacter sp. SL250 chromosome blastn 150 106 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
22486803 22486803 PRJNA811725_P_NODE_24398_length_310_cov_2.717300_g24152_i0 PRJNA811725 24398 310 2.7173 8.42363 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 244 4.4499999999999996e-60   NTclustered gi|2874253811|emb|OY969795.1| 464461 g24152 i0 96.026 65.3806451612903 151 4 97 2 1 150 654719 654570 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 20268 244 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;