RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA811714" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA811714 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2085349 2085349 PRJNA811714_P_NODE_4382_length_419_cov_6.312139_g4194_i0 PRJNA811714 4382 419 6.312139 26.44786241 Scrippsiella donghaiensis 2790054 SAR_Eukaryotes SAR_Eukaryotes 171 1.0699999999999998e-37   NTclustered gi|2879876354|gb|PQ851551.1| 2790054 g4194 i0 81.517 8.48687350835322 211 36 50 3 201 410 1302 1094 Scrippsiella donghaiensis isolate Sd1-JZB large subunit ribosomal RNA gene, partial sequence blastn 3556 171 1 Eukaryota Sar     Dinophyceae Peridiniales Peridiniaceae Scrippsiella Scrippsiella donghaiensis
5912867 5912867 PRJNA811714_P_NODE_28285_length_222_cov_17.677852_g28092_i0 PRJNA811714 28285 222 17.677852 39.24483144 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|1620113398|ref|XM_028675070.1| 5849 g28092 i0 94.444 0.162162162162162 36 0 16 2 114 148 581 615 Plasmodium gallinaceum conserved Plasmodium protein, unknown function (PGAL8A_00152600), partial mRNA blastn 36 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
16526422 16526422 PRJNA811714_P_NODE_16853_length_259_cov_4.290323_g16660_i0 PRJNA811714 16853 259 4.290323 11.11193657 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 479 9.13e-131   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g16660 i0 100 99.9382239382239 259 0 100 0 1 259 1012 1270 Plasmodium berghei p23-like protein mRNA, partial cds blastn 25884 479 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
17801185 17801185 PRJNA811714_P_NODE_14074_length_273_cov_8.475000_g13881_i0 PRJNA811714 14074 273 8.475 23.13675 root 1 Root_unresolved Root_unresolved 102 2.45e-17   NTclustered gi|219903754|emb|FM955257.1| 2996 g13881 i0 90.909 28.2490842490842 77 6 28 1 93 168 1774 1850 Hydrurus foetidus partial 28S rRNA gene blastn 7712 102 1 Eukaryota Sar     Chrysophyceae Hydrurales Hydruraceae Hydrurus Hydrurus foetidus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;