RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA811714" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA811714 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7601791 7601791 PRJNA811714_P_NODE_32326_length_200_cov_4.559055_g32133_i0 PRJNA811714 32326 200 4.559055 9.11811 Vannellidae 95227 Discosea other_Eukaryota 287 4.38e-73   NTclustered gi|327391632|gb|HM363630.1| 1002217 g32133 i0 92.574 101.125 202 11 100 4 1 200 549 350 Vannella sp. GERL14 small subunit ribosomal RNA gene, partial sequence blastn 20225 287 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERL14
18661178 18661178 PRJNA811714_P_NODE_7715_length_338_cov_4.788679_g7522_i0 PRJNA811714 7715 338 4.788679 16.18573502 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 610 4.199999999999999e-170   NTclustered gi|62865939|gb|AY929914.1| 325077 g7522 i0 99.118 103.514792899408 340 1 100 1 1 338 12 351 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 34988 610 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;