RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA811237 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2084548 2084548 PRJNA811237_S_NODE_8762_length_256_cov_1.362319_g8522_i0 PRJNA811237 8762 256 1.362319 3.48753664 Geopsychrobacteraceae bacterium 3065857 Bacteria Bacteria 52.8 0.023   NTclustered gi|2621703259|emb|OY762430.1| 3065857 g8522 i0 100 0.109375 28 0 11 0 188 215 1228970 1228997 MAG: Geopsychrobacteraceae bacterium isolate 31ebb314-3b6f-4c34-9fd3-1c731cc0fcc3 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae   Geopsychrobacteraceae bacterium
21211065 21211065 PRJNA811237_S_NODE_9957_length_243_cov_2.046392_g9717_i0 PRJNA811237 9957 243 2.046392 4.97273256 Desulfovibrio aminophilus 81425 Bacteria Bacteria 54.7 0.006   NTclustered gi|2908463109|gb|CP168306.1| 81425 g9717 i0 100 0.119341563786008 29 0 12 0 212 240 2340627 2340599 MAG: Desulfovibrio aminophilus isolate Co chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio aminophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;