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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA811237 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
808830 808830 PRJNA811237_S_NODE_9121_length_252_cov_2.064039_g8881_i0 PRJNA811237 9121 252 2.064039 5.20137828 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 163 1.01e-35   NTclustered gi|669165645|ref|XM_008620163.1| 1156394 g8881 i0 80.269 3.3968253968254 223 38 87 5 9 228 324 105 Saprolegnia diclina VS20 caltractin mRNA blastn 856 163 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
3359676 3359676 PRJNA811237_S_NODE_14643_length_211_cov_3.672840_g14403_i0 PRJNA811237 14643 211 3.67284 7.7496924 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 122 1.3899999999999998e-23   NTclustered gi|2795047393|ref|XM_067937896.1| 4785 g14403 i0 87.156 1.41706161137441 109 12 51 2 51 158 117 10 Phytophthora cinnamomi Nucleoside diphosphate kinase B (IUM83_13233), partial mRNA blastn 299 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
9736903 9736903 PRJNA811237_S_NODE_3308_length_397_cov_3.402299_g3068_i0 PRJNA811237 3308 397 3.402299 13.50712703 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 4.45e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g3068 i0 80.533 85.2090680100756 375 65 93 4 10 377 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
11012746 11012746 PRJNA811237_S_NODE_489_length_970_cov_2.916395_g320_i0 PRJNA811237 489 970 2.916395 28.2890315 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 649 0   NTclustered gi|2795016949|ref|XM_067930458.1| 4785 g320 i0 80.828 79.1515463917526 845 147 86 14 17 853 83 920 Phytophthora cinnamomi protein transporter Sec61 subunit alpha isoform 2 (IUM83_06269), partial mRNA blastn 76777 649 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
14837024 14837024 PRJNA811237_S_NODE_30032_length_165_cov_0.879310_g29792_i0 PRJNA811237 30032 165 0.87931 1.4508615 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 148 1.71e-31   NTclustered gi|698796373|ref|XM_009832914.1| 112090 g29792 i0 85.816 0.854545454545454 141 18 85 2 3 142 762 901 Aphanomyces astaci hypothetical protein mRNA blastn 141 148 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
16111207 16111207 PRJNA811237_S_NODE_14493_length_212_cov_1.877301_g14253_i0 PRJNA811237 14493 212 1.877301 3.97987812 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 200 6.29e-47   NTclustered gi|2794921684|ref|XM_067881073.1| 164328 g14253 i0 83.886 7.74056603773585 211 32 99 2 3 212 1332 1123 Phytophthora ramorum Citrate synthase, mitochondrial (KRP23_10605), partial mRNA blastn 1641 200 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
17387125 17387125 PRJNA811237_S_NODE_20374_length_188_cov_1.143885_g20134_i0 PRJNA811237 20374 188 1.143885 2.1505038 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.016   NTclustered gi|675181664|ref|XM_008901469.1| 761204 g20134 i0 100 0.297872340425532 28 0 15 0 79 106 625 598 Phytophthora parasitica INRA-310 hypothetical protein partial mRNA blastn 56 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
17387163 17387163 PRJNA811237_S_NODE_3234_length_402_cov_3.711048_g2994_i0 PRJNA811237 3234 402 3.711048 14.91841296 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 78.7 6.36e-10   NTclustered gi|673049422|ref|XM_008880450.1| 157072 g2994 i0 95.833 0.477611940298507 48 2 12 0 204 251 3171 3218 Aphanomyces invadans hypothetical protein, variant 2 mRNA blastn 192 78.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
17801155 17801155 PRJNA811237_S_NODE_9914_length_244_cov_1.046154_g9674_i0 PRJNA811237 9914 244 1.046154 2.55261576 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 178 3.48e-40   NTclustered gi|695434207|ref|XM_009533074.1| 67593 g9674 i0 83.77 5.75409836065574 191 27 77 4 25 213 189 1 Phytophthora sojae hypothetical protein partial mRNA blastn 1404 178 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
18660186 18660186 PRJNA811237_S_NODE_1235_length_645_cov_2.585570_g1014_i0 PRJNA811237 1235 645 2.58557 16.6769265 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 322 4.43e-83   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g1014 i0 78.476 39.1085271317829 525 90 79 22 11 522 716 202 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 25225 322 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
19935398 19935398 PRJNA811237_S_NODE_13836_length_216_cov_1.209581_g13596_i0 PRJNA811237 13836 216 1.209581 2.61269496 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 158 3.93e-34   NTclustered gi|166041637|emb|CU357669.1| 100861 g13596 i0 80.905 24.7268518518519 199 38 92 0 13 211 721 523 Aphanomyces euteiches cDNA blastn 5341 158 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
19935403 19935403 PRJNA811237_S_NODE_15396_length_208_cov_1.283019_g15156_i0 PRJNA811237 15396 208 1.283019 2.66867952 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 163 8.07e-36   NTclustered gi|2795025992|ref|XM_067924992.1| 4785 g15156 i0 83.616 18.6682692307692 177 25 84 4 34 208 489 663 Phytophthora cinnamomi chaperonin GroL (IUM83_01160), partial mRNA blastn 3883 163 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
21210992 21210992 PRJNA811237_S_NODE_21837_length_183_cov_1.253731_g21597_i0 PRJNA811237 21837 183 1.253731 2.29432773 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 97.1 7.1e-16   NTclustered gi|673046258|ref|XM_008878868.1| 157072 g21597 i0 87.059 6.83606557377049 85 11 46 0 60 144 246 162 Aphanomyces invadans 14-3-3-like protein mRNA blastn 1251 97.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
22485709 22485709 PRJNA811237_S_NODE_5538_length_310_cov_1.758621_g5298_i0 PRJNA811237 5538 310 1.758621 5.4517251 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 159 1.66e-34   NTclustered gi|166051101|emb|CU363198.1| 100861 g5298 i0 80.788 7.3 203 39 65 0 3 205 558 760 Aphanomyces euteiches cDNA blastn 2263 159 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
23761380 23761380 PRJNA811237_S_NODE_29579_length_165_cov_3.517241_g29339_i0 PRJNA811237 29579 165 3.517241 5.80344765 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 63.9 6.37e-6   NTclustered gi|669170970|ref|XM_008622612.1| 1156394 g29339 i0 93.182 7.98181818181818 44 1 26 2 30 72 265 223 Saprolegnia diclina VS20 rab family, other partial mRNA blastn 1317 63.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
25035238 25035238 PRJNA811237_S_NODE_20960_length_186_cov_1.138686_g20720_i0 PRJNA811237 20960 186 1.138686 2.11795596 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 206 1.15e-48   NTclustered gi|695438657|ref|XM_009534219.1| 67593 g20720 i0 86.559 7.04301075268817 186 25 100 0 1 186 617 432 Phytophthora sojae hypothetical protein partial mRNA blastn 1310 206 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;