RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA811237 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
808746 808746 PRJNA811237_S_NODE_14881_length_210_cov_1.763975_g14641_i0 PRJNA811237 14881 210 1.763975 3.7043475 Archangium violaceum 83451 Bacteria Bacteria 169 1.75e-37   NTclustered gi|1981856374|gb|CP069338.1| 83451 g14641 i0 84.358 56.8761904761905 179 20 83 7 18 192 10277523 10277349 Archangium violaceum strain SDU34 chromosome, complete genome blastn 11944 169 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
3359668 3359668 PRJNA811237_S_NODE_12443_length_224_cov_1.748571_g12203_i0 PRJNA811237 12443 224 1.748571 3.91679904 Myxococcus xanthus 34 Bacteria Bacteria 54.7 0.006   NTclustered gi|1957989826|gb|CP068048.1| 34 g12203 i0 96.875 1.76785714285714 32 1 14 0 171 202 5345529 5345560 Myxococcus xanthus strain R31 chromosome, complete genome blastn 396 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
22901170 22901170 PRJNA811237_S_NODE_28758_length_166_cov_0.871795_g28518_i0 PRJNA811237 28758 166 0.871795 1.4471797 Pseudomonadati 3379134 Bacteria Bacteria 104 3.78e-18   NTclustered gi|262076673|gb|CP001804.1| 502025 g28518 i0 79.861 18.6686746987952 144 27 86 2 10 152 7229417 7229275 Haliangium ochraceum DSM 14365, complete genome blastn 3099 104 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;