RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA811237 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1223576 1223576 PRJNA811237_S_NODE_10301_length_240_cov_1.633508_g10061_i0 PRJNA811237 10301 240 1.633508 3.9204192 Echinoidea 7625 Echinodermata other_Eukaryota 143 1.2499999999999998e-29   NTclustered gi|2037989806|ref|XM_041607733.1| 7654 g10061 i0 90.741 44.8375 108 9 45 1 134 240 1439 1332 PREDICTED: Lytechinus variegatus tubulin alpha-1 chain-like (LOC121414524), mRNA blastn 10761 143 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
2084468 2084468 PRJNA811237_S_NODE_1582_length_579_cov_2.828302_g1347_i0 PRJNA811237 1582 579 2.828302 16.37586858 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 178 9.04e-40   NTclustered gi|1752399365|ref|XM_011667624.2| 7668 g1347 i0 83.077 38.6839378238342 195 33 34 0 140 334 583 389 PREDICTED: Strongylocentrotus purpuratus ATP synthase F(0) complex subunit C2, mitochondrial (LOC583818), mRNA blastn 22398 178 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
7187075 7187075 PRJNA811237_S_NODE_31566_length_164_cov_0.886957_g31326_i0 PRJNA811237 31566 164 0.886957 1.45460948 Peronella japonica 262331 Echinodermata other_Eukaryota 54.7 0.004   NTclustered gi|606211636|dbj|AB779702.1| 262331 g31326 i0 100 0.176829268292683 29 0 18 0 32 60 1162 1190 Peronella japonica PjHox11/13b mRNA for transcription factor Hox11/13b, complete cds blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Clypeasteroida Laganidae Peronella Peronella japonica
12288179 12288179 PRJNA811237_S_NODE_7290_length_276_cov_1.273128_g7050_i0 PRJNA811237 7290 276 1.273128 3.51383328 Patiria miniata 46514 Echinodermata other_Eukaryota 139 1.8899999999999999e-28   NTclustered gi|1944844202|ref|XM_038192412.1| 46514 g7050 i0 75.812 1.97101449275362 277 65 100 2 1 276 624 899 PREDICTED: Patiria miniata calreticulin-like (LOC119722348), mRNA blastn 544 139 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;