RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA811237 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7187108 7187108 PRJNA811237_S_NODE_7006_length_280_cov_6.060606_g6766_i0 PRJNA811237 7006 280 6.060606 16.9696968 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 100 9.08e-17   NTclustered gi|470458047|ref|XM_004341152.1| 1257118 g6766 i0 90.667 7.175 75 7 27 0 2 76 157 231 Acanthamoeba castellanii str. Neff polyubiquitin, putative (ACA1_335920), partial mRNA blastn 2009 100 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9736923 9736923 PRJNA811237_S_NODE_5208_length_319_cov_1.003704_g4968_i0 PRJNA811237 5208 319 1.003704 3.20181576 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.008   NTclustered gi|470469247|ref|XM_004341931.1| 1257118 g4968 i0 94.444 0.112852664576803 36 1 11 1 218 253 1385 1351 Acanthamoeba castellanii str. Neff K+ channel tetramerization subfamily protein (ACA1_050340), partial mRNA blastn 36 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11012708 11012708 PRJNA811237_S_NODE_29529_length_166_cov_0.863248_g29289_i0 PRJNA811237 29529 166 0.863248 1.43299168 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.014   NTclustered gi|470512615|ref|XM_004352463.1| 1257118 g29289 i0 100 0.168674698795181 28 0 17 0 91 118 88 61 Acanthamoeba castellanii str. Neff GTPaseactivator protein for Ras-like GTPase (ACA1_360540), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;