RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA811237 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
808794 808794 PRJNA811237_S_NODE_33381_length_162_cov_3.407080_g33141_i0 PRJNA811237 33381 162 3.40708 5.5194696 Polychytrium aggregatum 110093 Fungi Fungi 219 1.26e-52   NTclustered gi|2432131711|ref|XM_053109357.1| 110093 g33141 i0 91.25 96.9938271604938 160 14 99 0 1 160 449 290 Polychytrium aggregatum calmodulin (BJ171DRAFT_488251), mRNA blastn 15713 219 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
12288122 12288122 PRJNA811237_S_NODE_23130_length_179_cov_1.176923_g22890_i0 PRJNA811237 23130 179 1.176923 2.10669217 Fimicolochytrium jonesii 1396493 Fungi Fungi 182 1.85e-41   NTclustered gi|2432080769|ref|XM_053070516.1| 1396493 g22890 i0 84.916 15.9608938547486 179 27 100 0 1 179 354 532 Fimicolochytrium jonesii mitochondrial carrier domain-containing protein (EV422DRAFT_532223), mRNA blastn 2857 182 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
19935420 19935420 PRJNA811237_S_NODE_19816_length_190_cov_1.085106_g19576_i0 PRJNA811237 19816 190 1.085106 2.0617014 Polychytrium aggregatum 110093 Fungi Fungi 195 2.56e-45   NTclustered gi|2432143596|ref|XM_053110630.1| 110093 g19576 i0 85.792 56.1 183 26 96 0 6 188 444 262 Polychytrium aggregatum cyclophilin B precursor (BJ171DRAFT_501021), mRNA blastn 10659 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;