RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA811237 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
808832 808832 PRJNA811237_S_NODE_9301_length_250_cov_2.248756_g9061_i0 PRJNA811237 9301 250 2.248756 5.62189 uncultured Dehalococcoidia bacterium 498747 Bacteria Bacteria 119 2.2e-22   NTclustered gi|2531976022|emb|OY282355.1| 498747 g9061 i0 84.746 23.624 118 18 47 0 1 118 2402909 2403026 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 5906 119 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
5912169 5912169 PRJNA811237_S_NODE_17685_length_198_cov_1.382550_g17445_i0 PRJNA811237 17685 198 1.38255 2.737449 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 60.2 1.03e-4   NTclustered gi|2814788335|emb|OY760861.2| 3022862 g17445 i0 100 0.161616161616162 32 0 16 0 93 124 2138712 2138681 MAG: Tepidiformaceae bacterium isolate 815c9385-4915-413f-8b4b-d9ebc7d9cf62 genome assembly, chromosome: 1 blastn 32 60.2 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;