RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA811237 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5051613 5051613 PRJNA811237_S_NODE_24124_length_176_cov_1.204724_g23884_i0 PRJNA811237 24124 176 1.204724 2.12031424 Bacteria 2 Bacteria Bacteria 58.4 3.19e-4   NTclustered gi|2916408352|gb|CP170455.1| 2052180 g23884 i0 92.683 0.465909090909091 41 2 23 1 44 84 547118 547157 MAG: Phycisphaerales bacterium isolate tig00000072 chromosome, complete genome blastn 82 58.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
8461807 8461807 PRJNA811237_S_NODE_13927_length_215_cov_2.054217_g13687_i0 PRJNA811237 13927 215 2.054217 4.41656655 Bremerella sp. TYQ1 3119568 Bacteria Bacteria 78.7 3.13e-10   NTclustered gi|2101355205|gb|CP083740.1| 3119568 g13687 i0 97.778 1.01395348837209 45 1 21 0 36 80 6482057 6482013 Bremerella sp. TYQ1 chromosome, complete genome blastn 218 78.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Bremerella Bremerella sp. TYQ1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;