RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA811237 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5912250 5912250 PRJNA811237_S_NODE_625_length_872_cov_3.884569_g447_i0 PRJNA811237 625 872 3.884569 33.87344168 Thecamonas trahens 529818 Root_unresolved Root_unresolved 121 2.38e-22   NTclustered gi|923136453|ref|XM_013906238.1| 461836 g447 i0 81.818 0.243119266055046 143 26 16 0 138 280 148 290 Thecamonas trahens ATCC 50062 50S ribosomal protein L36e (AMSG_01644), partial mRNA blastn 212 121 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
16111243 16111243 PRJNA811237_S_NODE_2653_length_445_cov_4.967172_g2413_i0 PRJNA811237 2653 445 4.967172 22.1039154 Karpovia croatica 2925417 Root_unresolved Root_unresolved 102 4.22e-17   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g2413 i0 87.64 13.7101123595506 89 9 20 2 38 125 6107 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6101 102 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
24175214 24175214 PRJNA811237_S_NODE_13739_length_216_cov_2.682635_g13499_i0 PRJNA811237 13739 216 2.682635 5.7944916 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 259 1.05e-64   NTclustered gi|923124074|ref|XM_013900052.1| 461836 g13499 i0 89.048 93.8842592592593 210 21 97 2 1 209 209 1 Thecamonas trahens ATCC 50062 actin-3 (AMSG_08145), partial mRNA blastn 20279 259 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
25035259 25035259 PRJNA811237_S_NODE_28540_length_166_cov_1.307692_g28300_i0 PRJNA811237 28540 166 1.307692 2.17076872 Thecamonas trahens 529818 Root_unresolved Root_unresolved 139 1.04e-28   NTclustered gi|923118331|ref|XM_013897188.1| 461836 g28300 i0 84.028 47.3192771084337 144 23 87 0 23 166 169 312 Thecamonas trahens ATCC 50062 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (AMSG_11497), partial mRNA blastn 7855 139 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;