RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA811237" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA811237 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7187108 7187108 PRJNA811237_S_NODE_7006_length_280_cov_6.060606_g6766_i0 PRJNA811237 7006 280 6.060606 16.9696968 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 100 9.08e-17   NTclustered gi|470458047|ref|XM_004341152.1| 1257118 g6766 i0 90.667 7.175 75 7 27 0 2 76 157 231 Acanthamoeba castellanii str. Neff polyubiquitin, putative (ACA1_335920), partial mRNA blastn 2009 100 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9736923 9736923 PRJNA811237_S_NODE_5208_length_319_cov_1.003704_g4968_i0 PRJNA811237 5208 319 1.003704 3.20181576 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.008   NTclustered gi|470469247|ref|XM_004341931.1| 1257118 g4968 i0 94.444 0.112852664576803 36 1 11 1 218 253 1385 1351 Acanthamoeba castellanii str. Neff K+ channel tetramerization subfamily protein (ACA1_050340), partial mRNA blastn 36 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11012708 11012708 PRJNA811237_S_NODE_29529_length_166_cov_0.863248_g29289_i0 PRJNA811237 29529 166 0.863248 1.43299168 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.014   NTclustered gi|470512615|ref|XM_004352463.1| 1257118 g29289 i0 100 0.168674698795181 28 0 17 0 91 118 88 61 Acanthamoeba castellanii str. Neff GTPaseactivator protein for Ras-like GTPase (ACA1_360540), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14837057 14837057 PRJNA811237_S_NODE_6032_length_299_cov_5.872000_g5792_i0 PRJNA811237 6032 299 5.872 17.55728 Acytostelium subglobosum 361139 Evosea other_Eukaryota 95.3 4.55e-15   NTclustered gi|831761070|ref|XM_012894692.1| 1410327 g5792 i0 87.654 3.06020066889632 81 10 27 0 38 118 399 319 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 915 95.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
16111231 16111231 PRJNA811237_S_NODE_23673_length_177_cov_1.593750_g23433_i0 PRJNA811237 23673 177 1.59375 2.8209375 Cribraria cancellata 300239 Evosea other_Eukaryota 121 4.039999999999999e-23   NTclustered gi|239585760|gb|FJ546665.1| 647247 g23433 i0 82.394 77.4576271186441 142 19 79 6 39 177 521 383 Cribraria cancellata var. fusca elongation factor 1-alpha (ef1alpha) gene, partial sequence blastn 13710 121 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Liceales Cribrariaceae Cribraria Cribraria cancellata
18660235 18660235 PRJNA811237_S_NODE_26475_length_169_cov_1.650000_g26235_i0 PRJNA811237 26475 169 1.65 2.7885 Entamoeba histolytica 5759 Evosea other_Eukaryota 52.8 0.014   NTclustered gi|67463259|ref|XM_643195.1| 294381 g26235 i0 100 0.165680473372781 28 0 17 0 15 42 917 944 Entamoeba histolytica HM-1:IMSS AIG1 family protein (EHI_195250), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
23761340 23761340 PRJNA811237_S_NODE_1539_length_587_cov_2.550186_g1305_i0 PRJNA811237 1539 587 2.550186 14.96959182 Cavenderia fasciculata 261658 Evosea other_Eukaryota 394 8.37e-105   NTclustered gi|470260760|ref|XM_004360149.1| 261658 g1305 i0 79.275 72.7137989778535 579 108 98 10 15 587 858 286 Cavenderia fasciculata elongation factor 1 alpha (efaAI), partial mRNA blastn 42683 394 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;