RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA807836" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA807836 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
807124 807124 PRJNA807836_S_NODE_23761_length_275_cov_1.826733_g23485_i0 PRJNA807836 23761 275 1.826733 5.02351575 Sporisorium graminicola 280036 Fungi Fungi 60.2 1.51e-4   NTclustered gi|1701856799|ref|XM_029886318.1| 280036 g23485 i0 100 8.21090909090909 32 0 12 0 130 161 2293 2324 Sporisorium graminicola uncharacterized protein (EX895_005726), partial mRNA blastn 2258 60.2 1 Eukaryota Opisthokonta Fungi Basidiomycota Ustilaginomycetes Ustilaginales Ustilaginaceae Sporisorium Sporisorium graminicola
2082956 2082956 PRJNA807836_S_NODE_27802_length_250_cov_0.870056_g27526_i0 PRJNA807836 27802 250 0.870056 2.17514 Melampsora laricis-populina 203908 Fungi Fungi 444 3.1999999999999986e-120   NTclustered gi|599373429|ref|XM_007407306.1| 747676 g27526 i0 98.8 1 250 2 100 1 1 250 1420 1172 Melampsora larici-populina 98AG31 uncharacterized protein (MELLADRAFT_47456), partial mRNA blastn 250 444 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Melampsoraceae Melampsora Melampsora laricis-populina
13560764 13560764 PRJNA807836_S_NODE_23091_length_280_cov_1.483092_g22815_i0 PRJNA807836 23091 280 1.483092 4.1526576 Heterobasidion irregulare 984962 Fungi Fungi 65.8 3.31e-6   NTclustered gi|695572815|ref|XM_009553142.1| 747525 g22815 i0 100 20.9642857142857 35 0 13 0 192 226 701 735 Heterobasidion irregulare TC 32-1 glyoxal oxidase 5 (glox5), partial mRNA blastn 5870 65.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Russulales Bondarzewiaceae Heterobasidion Heterobasidion irregulare
25033606 25033606 PRJNA807836_S_NODE_23860_length_274_cov_2.288557_g23584_i0 PRJNA807836 23860 274 2.288557 6.27064618 Rhodotorula toruloides 5286 Fungi Fungi 58.4 5.41e-4   NTclustered gi|1022851889|ref|XM_016415630.1| 1130832 g23584 i0 97.059 0.124087591240876 34 1 12 0 136 169 446 479 Rhodotorula toruloides NP11 RNA recognition motif domain containing protein (RHTO_01951), partial mRNA blastn 34 58.4 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula toruloides

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;