RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA807836" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA807836 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2498548 2498548 PRJNA807836_S_NODE_9982_length_478_cov_1.466667_g9706_i0 PRJNA807836 9982 478 1.466667 7.01066826 Blattabacterium 34098 Bacteria Bacteria 54.7 0.013   NTclustered gi|1893900879|gb|CP059218.1| 1653831 g9706 i0 100 0.355648535564854 29 0 6 0 29 57 400996 401024 Blattabacterium cuenoti strain ANAPcal chromosome blastn 170 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Blattabacteriaceae Blattabacterium Blattabacterium cuenoti
7601074 7601074 PRJNA807836_S_NODE_30006_length_244_cov_0.900585_g29730_i0 PRJNA807836 30006 244 0.900585 2.1974274 Panacibacter 1874621 Bacteria Bacteria 215 2.65e-51   NTclustered gi|2874254166|emb|OY970398.1| 866510 g29730 i0 84.977 44.3647540983607 213 30 87 2 8 219 3182091 3181880 MAG: uncultured Chitinophagaceae bacterium isolate MFD02832.bin.c.2 genome assembly, chromosome: 1 blastn 10825 217 0.990783410138249 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   uncultured Chitinophagaceae bacterium
25033384 25033384 PRJNA807836_S_NODE_14520_length_371_cov_1.838926_g14244_i0 PRJNA807836 14520 371 1.838926 6.82241546 Winogradskyella schleiferi 2686078 Bacteria Bacteria 52.8 0.035   NTclustered gi|1866746735|gb|CP053351.1| 2686078 g14244 i0 100 0.0754716981132075 28 0 8 0 26 53 3383608 3383635 Winogradskyella schleiferi strain Z215 chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Winogradskyella Winogradskyella schleiferi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;