RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA807685" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA807685 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3774546 3774546 PRJNA807685_P_NODE_24563_length_269_cov_8.504310_g23490_i0 PRJNA807685 24563 269 8.50431 22.8765939 Caenorhabditis 6237 Nematoda Nematoda 353 6.03e-93   NTclustered gi|413006566|emb|Z92784.2| 6239 g23490 i0 100 68.7360594795539 191 0 71 0 44 234 28933 28743 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 18490 353 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6326757 6326757 PRJNA807685_P_NODE_31425_length_226_cov_10.407407_g30352_i0 PRJNA807685 31425 226 10.407407 23.52073982 Chromadorea 119089 Nematoda Nematoda 342 1.07e-89   NTclustered gi|25167357|ref|NR_000053.1| 6239 g30352 i0 100 82.0442477876106 185 0 82 0 25 209 1589 1405 Caenorhabditis elegans 18S ribosomal RNA (rrn-1.1), rRNA blastn 18542 342 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6326832 6326832 PRJNA807685_P_NODE_51805_length_169_cov_4.303030_g50732_i0 PRJNA807685 51805 169 4.30303 7.2721207 Caenorhabditis 6237 Nematoda Nematoda 307 2.73e-79   NTclustered gi|356605872|gb|JN636061.1| 6238 g50732 i0 100 89.8757396449704 166 0 98 0 1 166 6075 6240 Caenorhabditis briggsae 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15189 307 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
7184780 7184780 PRJNA807685_P_NODE_28506_length_242_cov_62.765854_g27433_i0 PRJNA807685 28506 242 62.765854 151.89336668 Caenorhabditis elegans 6239 Nematoda Nematoda 285 1.97e-72   NTclustered gi|1279388955|gb|MG551716.1| 6239 g27433 i0 100 64.3884297520661 154 0 64 0 34 187 498 651 Caenorhabditis elegans isolate C.eleg_S1A small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 15582 285 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16108963 16108963 PRJNA807685_P_NODE_32333_length_222_cov_2.951351_g31260_i0 PRJNA807685 32333 222 2.951351 6.55199922 Caenorhabditis elegans 6239 Nematoda Nematoda 370 4.79e-98   NTclustered gi|413006566|emb|Z92784.2| 6239 g31260 i0 99.507 89.2072072072072 203 1 91 0 20 222 26580 26782 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 19804 370 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22483246 22483246 PRJNA807685_P_NODE_11498_length_477_cov_42.984091_g10442_i0 PRJNA807685 11498 477 42.984091 205.03411407 Caenorhabditis elegans 6239 Nematoda Nematoda 811 0   NTclustered gi|25167357|ref|NR_000053.1| 6239 g10442 i0 99.774 83.1174004192872 442 1 93 0 1 442 443 2 Caenorhabditis elegans 18S ribosomal RNA (rrn-1.1), rRNA blastn 39647 811 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23759289 23759289 PRJNA807685_P_NODE_56079_length_163_cov_1.849206_g55006_i0 PRJNA807685 56079 163 1.849206 3.01420578 Caenorhabditis elegans 6239 Nematoda Nematoda 69.4 1.35e-7   NTclustered gi|687866226|emb|LK928152.1| 6239 g55006 i0 95.349 1.05521472392638 43 2 42 0 29 71 9140 9098 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000504 blastn 172 69.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;